Project3_Website/uniprot_test.py at master · egmg726/Project3_Website · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
from Bio import SeqIO

record = SeqIO.read(open('P38398_uniprot.xml'),'uniprot-xml')
#record.features
for ref in record.annotations['references']:
    print ref.pubmed_id
    break
#record.annotations['comment_domain']
#print record.annotations['comment_tissuespecificity']
#record.annotations['comment_enzymeregulation']
#record.annotations['comment_disease']
#record.annotations['comment_onlineinformation']
#record.annotations['comment_subunit']
#record.annotations['comment_function']
#record.annotations['comment_polymorphism']
#record.annotations['comment_PTM']
#print record.annotations['comment_function']

#print record.annotations.keys()

for feature in record.features:

    print feature.qualifiers
    break
    feature.type
    feature.location
    feature.id
    feature.qualifiers
    #print feature.qualifiers
#str(feature.location).split(':')


#handle = open('P38398_uniprot.xml','rU')
#for record in SeqIO.parse(handle,'uniprot-xml'):
#    print(record)
#handle.close()