From 89688b2c029709000c7212bebae068cabf2fd6ec Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Mon, 23 Jun 2025 11:40:59 -0400
Subject: [PATCH 01/56] CI(macOS): Set up compilation for ASAN (Address
 Sanitizer)

---
 .github/workflows/macos.yml        | 16 +++++++++++++++-
 .github/workflows/macos_install.sh | 12 ++++++++++--
 2 files changed, 25 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/macos.yml b/.github/workflows/macos.yml
index e9e693e57c3..00a48a3195d 100644
--- a/.github/workflows/macos.yml
+++ b/.github/workflows/macos.yml
@@ -82,7 +82,21 @@ jobs:
         run: mkdir $HOME/install
       - name: Build and install
         shell: micromamba-shell {0}
-        run: source ./.github/workflows/macos_install.sh $HOME/install
+        run: source ./.github/workflows/macos_install.sh $HOME/install $G_CFLAGS_APPEND
+        env:
+          G_CFLAGS_APPEND: |-
+            -g \
+            -fno-omit-frame-pointer \
+            -fsanitize=address \
+            -fsanitize-recover=address \
+            -fsanitize-recover=all
+          G_LDFLAGS_APPEND: |-
+            -g \
+            -fno-omit-frame-pointer \
+            -fsanitize=address \
+            -fsanitize-recover=address \
+            -fsanitize-recover=all
+          ASAN_OPTIONS: detect_leaks=0
       - name: Add the bin directory to PATH
         run: echo "$HOME/install/bin" >> $GITHUB_PATH
       - name: Check installed version
diff --git a/.github/workflows/macos_install.sh b/.github/workflows/macos_install.sh
index 4f340c73f9e..f296dbc0498 100755
--- a/.github/workflows/macos_install.sh
+++ b/.github/workflows/macos_install.sh
@@ -66,7 +66,15 @@ export CPPFLAGS="-isystem${CONDA_PREFIX}/include"
 ./configure $CONFIGURE_FLAGS
 
 EXEMPT=""
-make -j$(sysctl -n hw.ncpu) CFLAGS="$CFLAGS -Werror $EXEMPT" \
-  CXXFLAGS="$CXXFLAGS -Werror $EXEMPT"
 
+# Adding -Werror to make's CFLAGS is a workaround for configuring with
+# an old version of configure, which issues compiler warnings and
+# errors out. This may be removed with upgraded configure.in file.
+makecmd="make"
+if [[ "$#" -ge 2 ]]; then
+    ARGS=("$@")
+    makecmd="make -j$(sysctl -n hw.ncpu) CFLAGS='$CFLAGS  -Werror ${ARGS[@]:1} $EXEMPT' CXXFLAGS='$CXXFLAGS -Werror ${ARGS[@]:1} $EXEMPT' LDFLAGS='$LDFLAGS $G_LDFLAGS_APPEND'"
+fi
+
+eval $makecmd
 make install

From 17f0feb2f854e21e6d2dd6d1372528bb03bad342 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Mon, 23 Jun 2025 14:06:03 -0400
Subject: [PATCH 02/56] Use folded and block chomping for multiline env var

---
 .github/workflows/macos.yml | 20 ++++++++++----------
 1 file changed, 10 insertions(+), 10 deletions(-)

diff --git a/.github/workflows/macos.yml b/.github/workflows/macos.yml
index 00a48a3195d..9bf420d4162 100644
--- a/.github/workflows/macos.yml
+++ b/.github/workflows/macos.yml
@@ -84,17 +84,17 @@ jobs:
         shell: micromamba-shell {0}
         run: source ./.github/workflows/macos_install.sh $HOME/install $G_CFLAGS_APPEND
         env:
-          G_CFLAGS_APPEND: |-
-            -g \
-            -fno-omit-frame-pointer \
-            -fsanitize=address \
-            -fsanitize-recover=address \
+          G_CFLAGS_APPEND: >-
+            -g
+            -fno-omit-frame-pointer
+            -fsanitize=address
+            -fsanitize-recover=address
             -fsanitize-recover=all
-          G_LDFLAGS_APPEND: |-
-            -g \
-            -fno-omit-frame-pointer \
-            -fsanitize=address \
-            -fsanitize-recover=address \
+          G_LDFLAGS_APPEND: >-
+            -g
+            -fno-omit-frame-pointer
+            -fsanitize=address
+            -fsanitize-recover=address
             -fsanitize-recover=all
           ASAN_OPTIONS: detect_leaks=0
       - name: Add the bin directory to PATH

From 74681c4cb3b0399820bb531c77ca0e81a86e1de6 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Mon, 23 Jun 2025 15:47:52 -0400
Subject: [PATCH 03/56] Update macos_install.sh

---
 .github/workflows/macos_install.sh | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/macos_install.sh b/.github/workflows/macos_install.sh
index f296dbc0498..8d4e02c077f 100755
--- a/.github/workflows/macos_install.sh
+++ b/.github/workflows/macos_install.sh
@@ -73,6 +73,7 @@ EXEMPT=""
 makecmd="make"
 if [[ "$#" -ge 2 ]]; then
     ARGS=("$@")
+    echo "in extra args"
     makecmd="make -j$(sysctl -n hw.ncpu) CFLAGS='$CFLAGS  -Werror ${ARGS[@]:1} $EXEMPT' CXXFLAGS='$CXXFLAGS -Werror ${ARGS[@]:1} $EXEMPT' LDFLAGS='$LDFLAGS $G_LDFLAGS_APPEND'"
 fi
 

From 324028146aa4df7e34d478e7e2d767b01c404e3e Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Mon, 23 Jun 2025 15:54:50 -0400
Subject: [PATCH 04/56] CI(macOS): Run script directly, without sourcing it

---
 .github/workflows/macos.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/macos.yml b/.github/workflows/macos.yml
index 9bf420d4162..f417bdb33a0 100644
--- a/.github/workflows/macos.yml
+++ b/.github/workflows/macos.yml
@@ -82,7 +82,7 @@ jobs:
         run: mkdir $HOME/install
       - name: Build and install
         shell: micromamba-shell {0}
-        run: source ./.github/workflows/macos_install.sh $HOME/install $G_CFLAGS_APPEND
+        run: ./.github/workflows/macos_install.sh $HOME/install $G_CFLAGS_APPEND
         env:
           G_CFLAGS_APPEND: >-
             -g

From ebc2d6e7f80dedf92ff0c7eb2be89ce457109960 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Mon, 23 Jun 2025 15:59:10 -0400
Subject: [PATCH 05/56] Update macos_install.sh to use bash shebang

---
 .github/workflows/macos_install.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/macos_install.sh b/.github/workflows/macos_install.sh
index 8d4e02c077f..8496ac762d4 100755
--- a/.github/workflows/macos_install.sh
+++ b/.github/workflows/macos_install.sh
@@ -1,4 +1,4 @@
-#!/bin/sh
+#!/bin/bash
 
 set -e
 

From 579f126c2d0e779da29a91feaab219309dc6d06c Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Mon, 23 Jun 2025 16:02:38 -0400
Subject: [PATCH 06/56] Call bash

---
 .github/workflows/macos.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/macos.yml b/.github/workflows/macos.yml
index f417bdb33a0..065a9ac5eb0 100644
--- a/.github/workflows/macos.yml
+++ b/.github/workflows/macos.yml
@@ -82,7 +82,7 @@ jobs:
         run: mkdir $HOME/install
       - name: Build and install
         shell: micromamba-shell {0}
-        run: ./.github/workflows/macos_install.sh $HOME/install $G_CFLAGS_APPEND
+        run: bash ./.github/workflows/macos_install.sh $HOME/install $G_CFLAGS_APPEND
         env:
           G_CFLAGS_APPEND: >-
             -g

From 2b6cb01771b6467c22634bdc45e643bfaede1d4f Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Mon, 23 Jun 2025 16:06:38 -0400
Subject: [PATCH 07/56] Update macos_install.sh debug makecmd

---
 .github/workflows/macos_install.sh | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/.github/workflows/macos_install.sh b/.github/workflows/macos_install.sh
index 8496ac762d4..a4311839938 100755
--- a/.github/workflows/macos_install.sh
+++ b/.github/workflows/macos_install.sh
@@ -71,11 +71,13 @@ EXEMPT=""
 # an old version of configure, which issues compiler warnings and
 # errors out. This may be removed with upgraded configure.in file.
 makecmd="make"
+echo "before extra argd"
 if [[ "$#" -ge 2 ]]; then
     ARGS=("$@")
     echo "in extra args"
     makecmd="make -j$(sysctl -n hw.ncpu) CFLAGS='$CFLAGS  -Werror ${ARGS[@]:1} $EXEMPT' CXXFLAGS='$CXXFLAGS -Werror ${ARGS[@]:1} $EXEMPT' LDFLAGS='$LDFLAGS $G_LDFLAGS_APPEND'"
 fi
 
+echo "The make command is: $makecmd"
 eval $makecmd
 make install

From ff63e5d6043c0ba89235027ffcc21c268f3a5fb7 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Mon, 23 Jun 2025 16:16:56 -0400
Subject: [PATCH 08/56] Update macos.yml remove deprecated-declarations error

---
 .github/workflows/macos.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/macos.yml b/.github/workflows/macos.yml
index 065a9ac5eb0..bb491d73035 100644
--- a/.github/workflows/macos.yml
+++ b/.github/workflows/macos.yml
@@ -90,6 +90,7 @@ jobs:
             -fsanitize=address
             -fsanitize-recover=address
             -fsanitize-recover=all
+            -Werror=no-deprecated-declaration
           G_LDFLAGS_APPEND: >-
             -g
             -fno-omit-frame-pointer

From 1c0e6ea7d8e978c50019541e2e1746bfbef3cf96 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Mon, 23 Jun 2025 16:20:52 -0400
Subject: [PATCH 09/56] Update macos.yml

---
 .github/workflows/macos.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/macos.yml b/.github/workflows/macos.yml
index bb491d73035..b9c605632a0 100644
--- a/.github/workflows/macos.yml
+++ b/.github/workflows/macos.yml
@@ -90,7 +90,7 @@ jobs:
             -fsanitize=address
             -fsanitize-recover=address
             -fsanitize-recover=all
-            -Werror=no-deprecated-declaration
+            -Werror=no-deprecated-declarations
           G_LDFLAGS_APPEND: >-
             -g
             -fno-omit-frame-pointer

From aadb4c41052d5bacd62d47d0794df27ebd5e136a Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Mon, 23 Jun 2025 16:25:42 -0400
Subject: [PATCH 10/56] Update macos.yml -Wno-error=deprecated-declarations

---
 .github/workflows/macos.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/macos.yml b/.github/workflows/macos.yml
index b9c605632a0..ff31d93d80d 100644
--- a/.github/workflows/macos.yml
+++ b/.github/workflows/macos.yml
@@ -90,7 +90,7 @@ jobs:
             -fsanitize=address
             -fsanitize-recover=address
             -fsanitize-recover=all
-            -Werror=no-deprecated-declarations
+            -Wno-error=deprecated-declarations
           G_LDFLAGS_APPEND: >-
             -g
             -fno-omit-frame-pointer

From f64154a45846163b4ce5f2fa7d5482974d77e190 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Mon, 23 Jun 2025 16:29:09 -0400
Subject: [PATCH 11/56] Update macos.yml -Wdeprecated-declarations

---
 .github/workflows/macos.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/macos.yml b/.github/workflows/macos.yml
index ff31d93d80d..c4cc3a63d72 100644
--- a/.github/workflows/macos.yml
+++ b/.github/workflows/macos.yml
@@ -91,6 +91,7 @@ jobs:
             -fsanitize-recover=address
             -fsanitize-recover=all
             -Wno-error=deprecated-declarations
+            -Wdeprecated-declarations
           G_LDFLAGS_APPEND: >-
             -g
             -fno-omit-frame-pointer

From 77a8fd17adba6568058c80e6ba6ab31d1008582e Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Mon, 23 Jun 2025 16:48:37 -0400
Subject: [PATCH 12/56] Update macos.yml --no-keep-going

---
 .github/workflows/macos.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/macos.yml b/.github/workflows/macos.yml
index c4cc3a63d72..5ab9e276ba1 100644
--- a/.github/workflows/macos.yml
+++ b/.github/workflows/macos.yml
@@ -99,6 +99,7 @@ jobs:
             -fsanitize-recover=address
             -fsanitize-recover=all
           ASAN_OPTIONS: detect_leaks=0
+          MAKEFLAGS: --no-keep-going
       - name: Add the bin directory to PATH
         run: echo "$HOME/install/bin" >> $GITHUB_PATH
       - name: Check installed version

From 437e1b660e86d85505fd09efc400d65777bc58eb Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Mon, 23 Jun 2025 16:52:20 -0400
Subject: [PATCH 13/56] Update macos.yml use -static-libasan for linker

---
 .github/workflows/macos.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/macos.yml b/.github/workflows/macos.yml
index 5ab9e276ba1..e02e265f39f 100644
--- a/.github/workflows/macos.yml
+++ b/.github/workflows/macos.yml
@@ -98,6 +98,7 @@ jobs:
             -fsanitize=address
             -fsanitize-recover=address
             -fsanitize-recover=all
+            -static-libasan
           ASAN_OPTIONS: detect_leaks=0
           MAKEFLAGS: --no-keep-going
       - name: Add the bin directory to PATH

From 79210b04d2a181381e5c89462f8f547d1068cc69 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Mon, 23 Jun 2025 17:05:14 -0400
Subject: [PATCH 14/56] =?UTF-8?q?Update=20macos.yml=20-shared-libsan,=20as?=
 =?UTF-8?q?=20-static-libasan=20isn=E2=80=99t=20available=20on=20macOS?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 .github/workflows/macos.yml | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/macos.yml b/.github/workflows/macos.yml
index e02e265f39f..70360937031 100644
--- a/.github/workflows/macos.yml
+++ b/.github/workflows/macos.yml
@@ -92,13 +92,14 @@ jobs:
             -fsanitize-recover=all
             -Wno-error=deprecated-declarations
             -Wdeprecated-declarations
+            -shared-libsan
           G_LDFLAGS_APPEND: >-
             -g
             -fno-omit-frame-pointer
             -fsanitize=address
             -fsanitize-recover=address
             -fsanitize-recover=all
-            -static-libasan
+            -shared-libsan
           ASAN_OPTIONS: detect_leaks=0
           MAKEFLAGS: --no-keep-going
       - name: Add the bin directory to PATH

From cdabb4832c5a28f96a792badf5969d4bd2f07ec6 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Mon, 23 Jun 2025 17:14:48 -0400
Subject: [PATCH 15/56] Update macos.yml remove shared libsan linker flag

Combine -fsanitize-recover modes
---
 .github/workflows/macos.yml | 5 +----
 1 file changed, 1 insertion(+), 4 deletions(-)

diff --git a/.github/workflows/macos.yml b/.github/workflows/macos.yml
index 70360937031..d835b8d8eb4 100644
--- a/.github/workflows/macos.yml
+++ b/.github/workflows/macos.yml
@@ -88,18 +88,15 @@ jobs:
             -g
             -fno-omit-frame-pointer
             -fsanitize=address
-            -fsanitize-recover=address
+            -fsanitize-recover=address,all
             -fsanitize-recover=all
             -Wno-error=deprecated-declarations
             -Wdeprecated-declarations
-            -shared-libsan
           G_LDFLAGS_APPEND: >-
             -g
             -fno-omit-frame-pointer
             -fsanitize=address
-            -fsanitize-recover=address
             -fsanitize-recover=all
-            -shared-libsan
           ASAN_OPTIONS: detect_leaks=0
           MAKEFLAGS: --no-keep-going
       - name: Add the bin directory to PATH

From db21a673351cae450f3d92facb2c51a6a8a1524c Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Mon, 23 Jun 2025 17:46:40 -0400
Subject: [PATCH 16/56] Update macos.yml add color with -fcolor-diagnostics

---
 .github/workflows/macos.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/macos.yml b/.github/workflows/macos.yml
index d835b8d8eb4..e87140c800c 100644
--- a/.github/workflows/macos.yml
+++ b/.github/workflows/macos.yml
@@ -86,6 +86,7 @@ jobs:
         env:
           G_CFLAGS_APPEND: >-
             -g
+            -fcolor-diagnostics
             -fno-omit-frame-pointer
             -fsanitize=address
             -fsanitize-recover=address,all

From ab72462f1e581f0d12fda5fa8c21f12ccdb3f51e Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Mon, 23 Jun 2025 17:53:22 -0400
Subject: [PATCH 17/56] Update macos_install.sh typo

---
 .github/workflows/macos_install.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/macos_install.sh b/.github/workflows/macos_install.sh
index a4311839938..40f24b43afb 100755
--- a/.github/workflows/macos_install.sh
+++ b/.github/workflows/macos_install.sh
@@ -71,7 +71,7 @@ EXEMPT=""
 # an old version of configure, which issues compiler warnings and
 # errors out. This may be removed with upgraded configure.in file.
 makecmd="make"
-echo "before extra argd"
+echo "before extra args"
 if [[ "$#" -ge 2 ]]; then
     ARGS=("$@")
     echo "in extra args"

From ecc8e3995130f62851e36e5b63edb98212607a40 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Mon, 23 Jun 2025 17:54:01 -0400
Subject: [PATCH 18/56] Update macos.yml verbose linker flags

---
 .github/workflows/macos.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/macos.yml b/.github/workflows/macos.yml
index e87140c800c..c8fa547ba89 100644
--- a/.github/workflows/macos.yml
+++ b/.github/workflows/macos.yml
@@ -95,6 +95,7 @@ jobs:
             -Wdeprecated-declarations
           G_LDFLAGS_APPEND: >-
             -g
+            -v
             -fno-omit-frame-pointer
             -fsanitize=address
             -fsanitize-recover=all

From d12084abe4296220798a6cdc18b8ed4f820cb3b1 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Wed, 25 Jun 2025 08:55:59 -0400
Subject: [PATCH 19/56] Comment out most added flags

---
 .github/workflows/macos.yml | 20 ++++++++++----------
 1 file changed, 10 insertions(+), 10 deletions(-)

diff --git a/.github/workflows/macos.yml b/.github/workflows/macos.yml
index c8fa547ba89..b47fdbf2fc2 100644
--- a/.github/workflows/macos.yml
+++ b/.github/workflows/macos.yml
@@ -85,20 +85,20 @@ jobs:
         run: bash ./.github/workflows/macos_install.sh $HOME/install $G_CFLAGS_APPEND
         env:
           G_CFLAGS_APPEND: >-
-            -g
+#            -g
             -fcolor-diagnostics
-            -fno-omit-frame-pointer
-            -fsanitize=address
-            -fsanitize-recover=address,all
-            -fsanitize-recover=all
-            -Wno-error=deprecated-declarations
-            -Wdeprecated-declarations
+#            -fno-omit-frame-pointer
+#            -fsanitize=address
+#            -fsanitize-recover=address,all
+#            -fsanitize-recover=all
+#            -Wno-error=deprecated-declarations
+#            -Wdeprecated-declarations
           G_LDFLAGS_APPEND: >-
-            -g
+#            -g
             -v
             -fno-omit-frame-pointer
-            -fsanitize=address
-            -fsanitize-recover=all
+#            -fsanitize=address
+#            -fsanitize-recover=all
           ASAN_OPTIONS: detect_leaks=0
           MAKEFLAGS: --no-keep-going
       - name: Add the bin directory to PATH

From 4104599f24309b6a01bd2ce3b1fa47517b506e60 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Wed, 25 Jun 2025 08:58:16 -0400
Subject: [PATCH 20/56] Add debug flag -g

---
 .github/workflows/macos.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/macos.yml b/.github/workflows/macos.yml
index b47fdbf2fc2..04639e6f607 100644
--- a/.github/workflows/macos.yml
+++ b/.github/workflows/macos.yml
@@ -85,7 +85,7 @@ jobs:
         run: bash ./.github/workflows/macos_install.sh $HOME/install $G_CFLAGS_APPEND
         env:
           G_CFLAGS_APPEND: >-
-#            -g
+            -g
             -fcolor-diagnostics
 #            -fno-omit-frame-pointer
 #            -fsanitize=address

From 7312a0f9573aad3f60f769077ccd3025092b9d8d Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Wed, 25 Jun 2025 09:02:01 -0400
Subject: [PATCH 21/56] Update macos.yml

---
 .github/workflows/macos.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/macos.yml b/.github/workflows/macos.yml
index 04639e6f607..a6297e8fc63 100644
--- a/.github/workflows/macos.yml
+++ b/.github/workflows/macos.yml
@@ -87,6 +87,7 @@ jobs:
           G_CFLAGS_APPEND: >-
             -g
             -fcolor-diagnostics
+
 #            -fno-omit-frame-pointer
 #            -fsanitize=address
 #            -fsanitize-recover=address,all
@@ -94,9 +95,8 @@ jobs:
 #            -Wno-error=deprecated-declarations
 #            -Wdeprecated-declarations
           G_LDFLAGS_APPEND: >-
-#            -g
             -v
-            -fno-omit-frame-pointer
+#            -fno-omit-frame-pointer
 #            -fsanitize=address
 #            -fsanitize-recover=all
           ASAN_OPTIONS: detect_leaks=0

From c83b0ddc38ad8f15416f173ee3d8424e9cd49152 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Wed, 25 Jun 2025 09:06:03 -0400
Subject: [PATCH 22/56] Remove debug flag

---
 .github/workflows/macos.yml | 1 -
 1 file changed, 1 deletion(-)

diff --git a/.github/workflows/macos.yml b/.github/workflows/macos.yml
index a6297e8fc63..276ea8f379a 100644
--- a/.github/workflows/macos.yml
+++ b/.github/workflows/macos.yml
@@ -85,7 +85,6 @@ jobs:
         run: bash ./.github/workflows/macos_install.sh $HOME/install $G_CFLAGS_APPEND
         env:
           G_CFLAGS_APPEND: >-
-            -g
             -fcolor-diagnostics
 
 #            -fno-omit-frame-pointer

From 98c3152459a3a44d7578eab2ad1a8e1f324d4769 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Wed, 25 Jun 2025 09:13:26 -0400
Subject: [PATCH 23/56] Remove bash call

---
 .github/workflows/macos.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/macos.yml b/.github/workflows/macos.yml
index 276ea8f379a..63d1829427f 100644
--- a/.github/workflows/macos.yml
+++ b/.github/workflows/macos.yml
@@ -82,7 +82,7 @@ jobs:
         run: mkdir $HOME/install
       - name: Build and install
         shell: micromamba-shell {0}
-        run: bash ./.github/workflows/macos_install.sh $HOME/install $G_CFLAGS_APPEND
+        run: ./.github/workflows/macos_install.sh $HOME/install $G_CFLAGS_APPEND
         env:
           G_CFLAGS_APPEND: >-
             -fcolor-diagnostics

From 03049e8377ed4fef1eb573969f1b72c7936e369b Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Wed, 25 Jun 2025 09:20:22 -0400
Subject: [PATCH 24/56] Update macos_install.sh add env vars to flags

---
 .github/workflows/macos_install.sh | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/macos_install.sh b/.github/workflows/macos_install.sh
index 40f24b43afb..a3e50d90370 100755
--- a/.github/workflows/macos_install.sh
+++ b/.github/workflows/macos_install.sh
@@ -71,6 +71,7 @@ EXEMPT=""
 # an old version of configure, which issues compiler warnings and
 # errors out. This may be removed with upgraded configure.in file.
 makecmd="make"
+makecmd="make -j$(sysctl -n hw.ncpu) CFLAGS='$CFLAGS  -Werror $EXEMPT' CXXFLAGS='$CXXFLAGS -Werror $EXEMPT' LDFLAGS='$LDFLAGS $G_LDFLAGS_APPEND'"
 echo "before extra args"
 if [[ "$#" -ge 2 ]]; then
     ARGS=("$@")

From 09ed305000f9993131dbaec41de45e54fa8f48fc Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Wed, 25 Jun 2025 09:21:06 -0400
Subject: [PATCH 25/56] Update macos.yml

---
 .github/workflows/macos.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/macos.yml b/.github/workflows/macos.yml
index 63d1829427f..5e80ee382d3 100644
--- a/.github/workflows/macos.yml
+++ b/.github/workflows/macos.yml
@@ -82,7 +82,7 @@ jobs:
         run: mkdir $HOME/install
       - name: Build and install
         shell: micromamba-shell {0}
-        run: ./.github/workflows/macos_install.sh $HOME/install $G_CFLAGS_APPEND
+        run: source ./.github/workflows/macos_install.sh $HOME/install
         env:
           G_CFLAGS_APPEND: >-
             -fcolor-diagnostics

From 955f90cc0d4f9c0a5134c0202a803648a5e580ab Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Wed, 25 Jun 2025 09:28:06 -0400
Subject: [PATCH 26/56] Update macos_install.sh shebang /bin/sh

---
 .github/workflows/macos_install.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/macos_install.sh b/.github/workflows/macos_install.sh
index a3e50d90370..170ef8b2ad6 100755
--- a/.github/workflows/macos_install.sh
+++ b/.github/workflows/macos_install.sh
@@ -1,4 +1,4 @@
-#!/bin/bash
+#!/bin/sh
 
 set -e
 

From fb1b3dbaebd394055e54549d96b3eefca3b5e003 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Wed, 25 Jun 2025 09:58:03 -0400
Subject: [PATCH 27/56] Update macos.yml comment out make flags

---
 .github/workflows/macos.yml | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/macos.yml b/.github/workflows/macos.yml
index 5e80ee382d3..c68e06108ff 100644
--- a/.github/workflows/macos.yml
+++ b/.github/workflows/macos.yml
@@ -86,7 +86,6 @@ jobs:
         env:
           G_CFLAGS_APPEND: >-
             -fcolor-diagnostics
-
 #            -fno-omit-frame-pointer
 #            -fsanitize=address
 #            -fsanitize-recover=address,all
@@ -98,8 +97,8 @@ jobs:
 #            -fno-omit-frame-pointer
 #            -fsanitize=address
 #            -fsanitize-recover=all
-          ASAN_OPTIONS: detect_leaks=0
-          MAKEFLAGS: --no-keep-going
+#          ASAN_OPTIONS: detect_leaks=0
+#          MAKEFLAGS: --no-keep-going
       - name: Add the bin directory to PATH
         run: echo "$HOME/install/bin" >> $GITHUB_PATH
       - name: Check installed version

From 30b04b2ee50a5e316e5f0589c912b38ec4947889 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Wed, 25 Jun 2025 10:06:21 -0400
Subject: [PATCH 28/56] set -x, run normal make, with flags

---
 .github/workflows/macos_install.sh | 22 +++++++++++++---------
 1 file changed, 13 insertions(+), 9 deletions(-)

diff --git a/.github/workflows/macos_install.sh b/.github/workflows/macos_install.sh
index 170ef8b2ad6..ef4dfb5727c 100755
--- a/.github/workflows/macos_install.sh
+++ b/.github/workflows/macos_install.sh
@@ -1,6 +1,7 @@
 #!/bin/sh
 
 set -e
+set -x
 
 if [ -z "$1" ]; then
     echo "Usage: $0 PREFIX"
@@ -70,15 +71,18 @@ EXEMPT=""
 # Adding -Werror to make's CFLAGS is a workaround for configuring with
 # an old version of configure, which issues compiler warnings and
 # errors out. This may be removed with upgraded configure.in file.
-makecmd="make"
-makecmd="make -j$(sysctl -n hw.ncpu) CFLAGS='$CFLAGS  -Werror $EXEMPT' CXXFLAGS='$CXXFLAGS -Werror $EXEMPT' LDFLAGS='$LDFLAGS $G_LDFLAGS_APPEND'"
+#makecmd="make"
+#makecmd="make -j$(sysctl -n hw.ncpu) CFLAGS='$CFLAGS  -Werror $EXEMPT' CXXFLAGS='$CXXFLAGS -Werror $EXEMPT' LDFLAGS='$LDFLAGS $G_LDFLAGS_APPEND'"
+echo "Running normal make, with flags"
+make -j$(sysctl -n hw.ncpu) CFLAGS='$CFLAGS  -Werror $EXEMPT' CXXFLAGS='$CXXFLAGS -Werror $EXEMPT' LDFLAGS='$LDFLAGS $G_LDFLAGS_APPEND'
+
 echo "before extra args"
-if [[ "$#" -ge 2 ]]; then
-    ARGS=("$@")
-    echo "in extra args"
-    makecmd="make -j$(sysctl -n hw.ncpu) CFLAGS='$CFLAGS  -Werror ${ARGS[@]:1} $EXEMPT' CXXFLAGS='$CXXFLAGS -Werror ${ARGS[@]:1} $EXEMPT' LDFLAGS='$LDFLAGS $G_LDFLAGS_APPEND'"
-fi
+#if [[ "$#" -ge 2 ]]; then
+#    ARGS=("$@")
+#    echo "in extra args"
+#    makecmd="make -j$(sysctl -n hw.ncpu) CFLAGS='$CFLAGS  -Werror ${ARGS[@]:1} $EXEMPT' CXXFLAGS='$CXXFLAGS -Werror ${ARGS[@]:1} $EXEMPT' LDFLAGS='$LDFLAGS $G_LDFLAGS_APPEND'"
+#fi
 
-echo "The make command is: $makecmd"
-eval $makecmd
+#echo "The make command is: $makecmd"
+#eval $makecmd
 make install

From 4780fb280c527aed79cc6656cd18eaf192099ba5 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Wed, 25 Jun 2025 10:40:11 -0400
Subject: [PATCH 29/56] Update macos_install.sh G_LDFLAGS_APPEND at configure

---
 .github/workflows/macos_install.sh | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/macos_install.sh b/.github/workflows/macos_install.sh
index ef4dfb5727c..9e1f6512fc6 100755
--- a/.github/workflows/macos_install.sh
+++ b/.github/workflows/macos_install.sh
@@ -64,7 +64,7 @@ export CFLAGS="-O2 -pipe -ffp-contract=off -arch ${CONDA_ARCH} -DGL_SILENCE_DEPR
 export CXXFLAGS="-O2 -pipe -ffp-contract=off -stdlib=libc++ -arch ${CONDA_ARCH} -Wall -Wextra -Wpedantic"
 export CPPFLAGS="-isystem${CONDA_PREFIX}/include"
 
-./configure $CONFIGURE_FLAGS
+LDFLAGS="$LDFLAGS $G_LDFLAGS_APPEND" ./configure $CONFIGURE_FLAGS
 
 EXEMPT=""
 
@@ -74,7 +74,7 @@ EXEMPT=""
 #makecmd="make"
 #makecmd="make -j$(sysctl -n hw.ncpu) CFLAGS='$CFLAGS  -Werror $EXEMPT' CXXFLAGS='$CXXFLAGS -Werror $EXEMPT' LDFLAGS='$LDFLAGS $G_LDFLAGS_APPEND'"
 echo "Running normal make, with flags"
-make -j$(sysctl -n hw.ncpu) CFLAGS='$CFLAGS  -Werror $EXEMPT' CXXFLAGS='$CXXFLAGS -Werror $EXEMPT' LDFLAGS='$LDFLAGS $G_LDFLAGS_APPEND'
+make -j$(sysctl -n hw.ncpu) CFLAGS='$CFLAGS  -Werror $EXEMPT' CXXFLAGS='$CXXFLAGS -Werror $EXEMPT'
 
 echo "before extra args"
 #if [[ "$#" -ge 2 ]]; then

From 6842193eb47070d93f65f99a5cb5921b82411b06 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Wed, 25 Jun 2025 10:48:42 -0400
Subject: [PATCH 30/56] Update macos_install.sh make args double quoted

---
 .github/workflows/macos_install.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/macos_install.sh b/.github/workflows/macos_install.sh
index 9e1f6512fc6..3fbd062f0a6 100755
--- a/.github/workflows/macos_install.sh
+++ b/.github/workflows/macos_install.sh
@@ -74,7 +74,7 @@ EXEMPT=""
 #makecmd="make"
 #makecmd="make -j$(sysctl -n hw.ncpu) CFLAGS='$CFLAGS  -Werror $EXEMPT' CXXFLAGS='$CXXFLAGS -Werror $EXEMPT' LDFLAGS='$LDFLAGS $G_LDFLAGS_APPEND'"
 echo "Running normal make, with flags"
-make -j$(sysctl -n hw.ncpu) CFLAGS='$CFLAGS  -Werror $EXEMPT' CXXFLAGS='$CXXFLAGS -Werror $EXEMPT'
+make -j$(sysctl -n hw.ncpu) CFLAGS="$CFLAGS  -Werror $EXEMPT" CXXFLAGS="$CXXFLAGS -Werror $EXEMPT"
 
 echo "before extra args"
 #if [[ "$#" -ge 2 ]]; then

From 6a1199bb805be373e32f67f9b39549006754c96e Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Wed, 25 Jun 2025 11:23:48 -0400
Subject: [PATCH 31/56] Update macos_install.sh use makecmd

---
 .github/workflows/macos_install.sh | 10 ++++++----
 1 file changed, 6 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/macos_install.sh b/.github/workflows/macos_install.sh
index 3fbd062f0a6..1d6946ec3a1 100755
--- a/.github/workflows/macos_install.sh
+++ b/.github/workflows/macos_install.sh
@@ -73,8 +73,10 @@ EXEMPT=""
 # errors out. This may be removed with upgraded configure.in file.
 #makecmd="make"
 #makecmd="make -j$(sysctl -n hw.ncpu) CFLAGS='$CFLAGS  -Werror $EXEMPT' CXXFLAGS='$CXXFLAGS -Werror $EXEMPT' LDFLAGS='$LDFLAGS $G_LDFLAGS_APPEND'"
-echo "Running normal make, with flags"
-make -j$(sysctl -n hw.ncpu) CFLAGS="$CFLAGS  -Werror $EXEMPT" CXXFLAGS="$CXXFLAGS -Werror $EXEMPT"
+makecmd="make -j$(sysctl -n hw.ncpu) CFLAGS='$CFLAGS  -Werror $EXEMPT' CXXFLAGS='$CXXFLAGS -Werror $EXEMPT'"
+
+#echo "Running normal make, with flags"
+#make -j$(sysctl -n hw.ncpu) CFLAGS="$CFLAGS  -Werror $EXEMPT" CXXFLAGS="$CXXFLAGS -Werror $EXEMPT"
 
 echo "before extra args"
 #if [[ "$#" -ge 2 ]]; then
@@ -83,6 +85,6 @@ echo "before extra args"
 #    makecmd="make -j$(sysctl -n hw.ncpu) CFLAGS='$CFLAGS  -Werror ${ARGS[@]:1} $EXEMPT' CXXFLAGS='$CXXFLAGS -Werror ${ARGS[@]:1} $EXEMPT' LDFLAGS='$LDFLAGS $G_LDFLAGS_APPEND'"
 #fi
 
-#echo "The make command is: $makecmd"
-#eval $makecmd
+echo "The make command is: $makecmd"
+eval $makecmd
 make install

From cabed6c713b1a999ad2ff4fe03b451b77d531379 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Wed, 25 Jun 2025 11:39:03 -0400
Subject: [PATCH 32/56] Update macos.yml enable flags

---
 .github/workflows/macos.yml | 21 +++++++++++----------
 1 file changed, 11 insertions(+), 10 deletions(-)

diff --git a/.github/workflows/macos.yml b/.github/workflows/macos.yml
index c68e06108ff..6a1564fad2a 100644
--- a/.github/workflows/macos.yml
+++ b/.github/workflows/macos.yml
@@ -85,19 +85,20 @@ jobs:
         run: source ./.github/workflows/macos_install.sh $HOME/install
         env:
           G_CFLAGS_APPEND: >-
+            -g
             -fcolor-diagnostics
-#            -fno-omit-frame-pointer
-#            -fsanitize=address
-#            -fsanitize-recover=address,all
-#            -fsanitize-recover=all
-#            -Wno-error=deprecated-declarations
-#            -Wdeprecated-declarations
+            -fno-omit-frame-pointer
+            -fsanitize=address
+            -fsanitize-recover=address,all
+            -fsanitize-recover=all
+            -Wno-error=deprecated-declarations
+            -Wdeprecated-declarations
           G_LDFLAGS_APPEND: >-
             -v
-#            -fno-omit-frame-pointer
-#            -fsanitize=address
-#            -fsanitize-recover=all
-#          ASAN_OPTIONS: detect_leaks=0
+            -fno-omit-frame-pointer
+            -fsanitize=address
+            -fsanitize-recover=all
+          ASAN_OPTIONS: detect_leaks=0
 #          MAKEFLAGS: --no-keep-going
       - name: Add the bin directory to PATH
         run: echo "$HOME/install/bin" >> $GITHUB_PATH

From d7dea53a93c7a25dfd43b79044220e9b0ecf459b Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Wed, 25 Jun 2025 12:11:22 -0400
Subject: [PATCH 33/56] Update macos_install.sh use makecmd without LDFLAGS,
 but LDFLAGS on configure

---
 .github/workflows/macos_install.sh | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/.github/workflows/macos_install.sh b/.github/workflows/macos_install.sh
index 1d6946ec3a1..ab9449f711a 100755
--- a/.github/workflows/macos_install.sh
+++ b/.github/workflows/macos_install.sh
@@ -79,11 +79,11 @@ makecmd="make -j$(sysctl -n hw.ncpu) CFLAGS='$CFLAGS  -Werror $EXEMPT' CXXFLAGS=
 #make -j$(sysctl -n hw.ncpu) CFLAGS="$CFLAGS  -Werror $EXEMPT" CXXFLAGS="$CXXFLAGS -Werror $EXEMPT"
 
 echo "before extra args"
-#if [[ "$#" -ge 2 ]]; then
-#    ARGS=("$@")
-#    echo "in extra args"
-#    makecmd="make -j$(sysctl -n hw.ncpu) CFLAGS='$CFLAGS  -Werror ${ARGS[@]:1} $EXEMPT' CXXFLAGS='$CXXFLAGS -Werror ${ARGS[@]:1} $EXEMPT' LDFLAGS='$LDFLAGS $G_LDFLAGS_APPEND'"
-#fi
+if [[ "$#" -ge 2 ]]; then
+    ARGS=("$@")
+    echo "in extra args"
+    makecmd="make -j$(sysctl -n hw.ncpu) CFLAGS='$CFLAGS  -Werror ${ARGS[@]:1} $EXEMPT' CXXFLAGS='$CXXFLAGS -Werror ${ARGS[@]:1} $EXEMPT'"
+fi
 
 echo "The make command is: $makecmd"
 eval $makecmd

From 11ff56d79220627d0809c755de87b8fc4557f4f2 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Wed, 25 Jun 2025 13:04:00 -0400
Subject: [PATCH 34/56] Update macos.yml remove verbose linker flag

---
 .github/workflows/macos.yml | 1 -
 1 file changed, 1 deletion(-)

diff --git a/.github/workflows/macos.yml b/.github/workflows/macos.yml
index 6a1564fad2a..fe2d588ce8c 100644
--- a/.github/workflows/macos.yml
+++ b/.github/workflows/macos.yml
@@ -94,7 +94,6 @@ jobs:
             -Wno-error=deprecated-declarations
             -Wdeprecated-declarations
           G_LDFLAGS_APPEND: >-
-            -v
             -fno-omit-frame-pointer
             -fsanitize=address
             -fsanitize-recover=all

From 6c2ec4ecfcb54865c5d4e9b048709292bc370ab4 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Wed, 25 Jun 2025 13:05:18 -0400
Subject: [PATCH 35/56] Update macos.yml comment recover all

---
 .github/workflows/macos.yml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/macos.yml b/.github/workflows/macos.yml
index fe2d588ce8c..b70913e24de 100644
--- a/.github/workflows/macos.yml
+++ b/.github/workflows/macos.yml
@@ -89,14 +89,14 @@ jobs:
             -fcolor-diagnostics
             -fno-omit-frame-pointer
             -fsanitize=address
-            -fsanitize-recover=address,all
-            -fsanitize-recover=all
+            -fsanitize-recover=address
+#            -fsanitize-recover=all
             -Wno-error=deprecated-declarations
             -Wdeprecated-declarations
           G_LDFLAGS_APPEND: >-
             -fno-omit-frame-pointer
             -fsanitize=address
-            -fsanitize-recover=all
+            -fsanitize-recover=address
           ASAN_OPTIONS: detect_leaks=0
 #          MAKEFLAGS: --no-keep-going
       - name: Add the bin directory to PATH

From 31d555adce875baaa15083804db6fd6442a63586 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Wed, 25 Jun 2025 13:06:12 -0400
Subject: [PATCH 36/56] Update macos.yml move comment

---
 .github/workflows/macos.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/macos.yml b/.github/workflows/macos.yml
index b70913e24de..3066efc576e 100644
--- a/.github/workflows/macos.yml
+++ b/.github/workflows/macos.yml
@@ -90,9 +90,9 @@ jobs:
             -fno-omit-frame-pointer
             -fsanitize=address
             -fsanitize-recover=address
-#            -fsanitize-recover=all
             -Wno-error=deprecated-declarations
             -Wdeprecated-declarations
+#            -fsanitize-recover=all
           G_LDFLAGS_APPEND: >-
             -fno-omit-frame-pointer
             -fsanitize=address

From db10ef6d33bc7efb25b3e36baaaaeff17d04beff Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Wed, 25 Jun 2025 13:17:53 -0400
Subject: [PATCH 37/56] Update macos.yml comment out recover

---
 .github/workflows/macos.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/macos.yml b/.github/workflows/macos.yml
index 3066efc576e..1193e3eb9c1 100644
--- a/.github/workflows/macos.yml
+++ b/.github/workflows/macos.yml
@@ -89,14 +89,14 @@ jobs:
             -fcolor-diagnostics
             -fno-omit-frame-pointer
             -fsanitize=address
-            -fsanitize-recover=address
             -Wno-error=deprecated-declarations
             -Wdeprecated-declarations
+#            -fsanitize-recover=address
 #            -fsanitize-recover=all
           G_LDFLAGS_APPEND: >-
             -fno-omit-frame-pointer
             -fsanitize=address
-            -fsanitize-recover=address
+#            -fsanitize-recover=address
           ASAN_OPTIONS: detect_leaks=0
 #          MAKEFLAGS: --no-keep-going
       - name: Add the bin directory to PATH

From db649b5a5d6ec6e21e41b2c9bb7ab2601652b93a Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Wed, 25 Jun 2025 13:43:38 -0400
Subject: [PATCH 38/56] Update macos.yml show llvm-symbolizer

---
 .github/workflows/macos.yml | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/macos.yml b/.github/workflows/macos.yml
index 1193e3eb9c1..365f1d4af49 100644
--- a/.github/workflows/macos.yml
+++ b/.github/workflows/macos.yml
@@ -80,6 +80,9 @@ jobs:
           $CC --version
       - name: Create installation directory
         run: mkdir $HOME/install
+      - name: Show llvm-symbolizer path
+        shell: micromamba-shell {0}
+        run: which llvm-symboliser
       - name: Build and install
         shell: micromamba-shell {0}
         run: source ./.github/workflows/macos_install.sh $HOME/install
@@ -97,7 +100,7 @@ jobs:
             -fno-omit-frame-pointer
             -fsanitize=address
 #            -fsanitize-recover=address
-          ASAN_OPTIONS: detect_leaks=0
+          ASAN_OPTIONS: detect_leaks=0,detect_odr_violation=1
 #          MAKEFLAGS: --no-keep-going
       - name: Add the bin directory to PATH
         run: echo "$HOME/install/bin" >> $GITHUB_PATH

From 1037692ef24564876e0bb67dd7e16e1a06dabb22 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Wed, 25 Jun 2025 13:45:33 -0400
Subject: [PATCH 39/56] Update macos.yml llvm-symbolizer-20

---
 .github/workflows/macos.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/macos.yml b/.github/workflows/macos.yml
index 365f1d4af49..942a9ab5ae9 100644
--- a/.github/workflows/macos.yml
+++ b/.github/workflows/macos.yml
@@ -82,7 +82,7 @@ jobs:
         run: mkdir $HOME/install
       - name: Show llvm-symbolizer path
         shell: micromamba-shell {0}
-        run: which llvm-symboliser
+        run: which llvm-symboliser-20
       - name: Build and install
         shell: micromamba-shell {0}
         run: source ./.github/workflows/macos_install.sh $HOME/install

From 7d6cdaabbd60b74f483b5eee26f0da06939921e6 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Wed, 25 Jun 2025 13:49:54 -0400
Subject: [PATCH 40/56] Update conda-requirements-dev-arm64.txt add llvm-tools

---
 macos/files/conda-requirements-dev-arm64.txt | 1 +
 1 file changed, 1 insertion(+)

diff --git a/macos/files/conda-requirements-dev-arm64.txt b/macos/files/conda-requirements-dev-arm64.txt
index c94d484e0dd..59b1cc9f56a 100644
--- a/macos/files/conda-requirements-dev-arm64.txt
+++ b/macos/files/conda-requirements-dev-arm64.txt
@@ -30,6 +30,7 @@ libsvm
 libtiff
 lld
 llvm-openmp
+llvm-tools
 matplotlib
 numpy<2
 openblas

From ffcc4eb322a78c183c9d65cf1623219c0845c6c1 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Wed, 25 Jun 2025 13:53:41 -0400
Subject: [PATCH 41/56] Update macos.yml

---
 .github/workflows/macos.yml | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/macos.yml b/.github/workflows/macos.yml
index 942a9ab5ae9..444890a8db3 100644
--- a/.github/workflows/macos.yml
+++ b/.github/workflows/macos.yml
@@ -80,9 +80,11 @@ jobs:
           $CC --version
       - name: Create installation directory
         run: mkdir $HOME/install
-      - name: Show llvm-symbolizer path
+      - run: show clang
         shell: micromamba-shell {0}
-        run: which llvm-symboliser-20
+      - name: Show llvm-symbolizer
+        shell: micromamba-shell {0}
+        run: which llvm-symboliser
       - name: Build and install
         shell: micromamba-shell {0}
         run: source ./.github/workflows/macos_install.sh $HOME/install

From b85889194cf2d834fa180e49497d5a4685a3a599 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Wed, 25 Jun 2025 13:56:10 -0400
Subject: [PATCH 42/56] Update macos.yml

---
 .github/workflows/macos.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/macos.yml b/.github/workflows/macos.yml
index 444890a8db3..37306d42325 100644
--- a/.github/workflows/macos.yml
+++ b/.github/workflows/macos.yml
@@ -80,7 +80,7 @@ jobs:
           $CC --version
       - name: Create installation directory
         run: mkdir $HOME/install
-      - run: show clang
+      - run: which clang
         shell: micromamba-shell {0}
       - name: Show llvm-symbolizer
         shell: micromamba-shell {0}

From 28e9235661403b173aa770bd68fcb10b9d5e4939 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Wed, 25 Jun 2025 14:05:41 -0400
Subject: [PATCH 43/56] Update conda-requirements-dev-arm64.txt add llvm

---
 macos/files/conda-requirements-dev-arm64.txt | 1 +
 1 file changed, 1 insertion(+)

diff --git a/macos/files/conda-requirements-dev-arm64.txt b/macos/files/conda-requirements-dev-arm64.txt
index 59b1cc9f56a..cfad3c7b4ff 100644
--- a/macos/files/conda-requirements-dev-arm64.txt
+++ b/macos/files/conda-requirements-dev-arm64.txt
@@ -29,6 +29,7 @@ libpng
 libsvm
 libtiff
 lld
+llvm
 llvm-openmp
 llvm-tools
 matplotlib

From b23d047f0bc2828236521c5e03b7bf5814960333 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Wed, 25 Jun 2025 14:09:39 -0400
Subject: [PATCH 44/56] Update macos.yml typo llvm-symbolizer

---
 .github/workflows/macos.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/macos.yml b/.github/workflows/macos.yml
index 37306d42325..6a0a5d6317d 100644
--- a/.github/workflows/macos.yml
+++ b/.github/workflows/macos.yml
@@ -84,7 +84,7 @@ jobs:
         shell: micromamba-shell {0}
       - name: Show llvm-symbolizer
         shell: micromamba-shell {0}
-        run: which llvm-symboliser
+        run: which llvm-symbolizer
       - name: Build and install
         shell: micromamba-shell {0}
         run: source ./.github/workflows/macos_install.sh $HOME/install

From 8573a57e8107f4d3b1b5b23db6f2c0a64964f9b2 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Wed, 25 Jun 2025 14:11:40 -0400
Subject: [PATCH 45/56] Update macos_install.sh remove set -x that showed the
 commands that ran

---
 .github/workflows/macos_install.sh | 1 -
 1 file changed, 1 deletion(-)

diff --git a/.github/workflows/macos_install.sh b/.github/workflows/macos_install.sh
index ab9449f711a..3e66af6c053 100755
--- a/.github/workflows/macos_install.sh
+++ b/.github/workflows/macos_install.sh
@@ -1,7 +1,6 @@
 #!/bin/sh
 
 set -e
-set -x
 
 if [ -z "$1" ]; then
     echo "Usage: $0 PREFIX"

From f5fb94bd79b3ffa4aac2e0df853d31c6b1d37847 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Wed, 25 Jun 2025 14:12:03 -0400
Subject: [PATCH 46/56] Update conda-requirements-dev-arm64.txt remove llvm

---
 macos/files/conda-requirements-dev-arm64.txt | 1 -
 1 file changed, 1 deletion(-)

diff --git a/macos/files/conda-requirements-dev-arm64.txt b/macos/files/conda-requirements-dev-arm64.txt
index cfad3c7b4ff..59b1cc9f56a 100644
--- a/macos/files/conda-requirements-dev-arm64.txt
+++ b/macos/files/conda-requirements-dev-arm64.txt
@@ -29,7 +29,6 @@ libpng
 libsvm
 libtiff
 lld
-llvm
 llvm-openmp
 llvm-tools
 matplotlib

From 0ceb0e27680b8a5b6586648871110a8804e6f18a Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Wed, 25 Jun 2025 15:16:30 -0400
Subject: [PATCH 47/56] Update macos.yml detect leaks and odr

---
 .github/workflows/macos.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/macos.yml b/.github/workflows/macos.yml
index 6a0a5d6317d..7817faa20b3 100644
--- a/.github/workflows/macos.yml
+++ b/.github/workflows/macos.yml
@@ -23,6 +23,7 @@ jobs:
     runs-on: macos-14
     env:
       PYTHONWARNINGS: always
+      ASAN_OPTIONS: detect_leaks=1,detect_odr_violation=1
     steps:
       - name: Info
         run: |

From 86d278db24dbfa90bc0b06c087dd46b2c1cb6481 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Wed, 25 Jun 2025 15:59:54 -0400
Subject: [PATCH 48/56] Update macos.yml detect leaks on compilation

---
 .github/workflows/macos.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/macos.yml b/.github/workflows/macos.yml
index 7817faa20b3..5c8efade64d 100644
--- a/.github/workflows/macos.yml
+++ b/.github/workflows/macos.yml
@@ -103,7 +103,7 @@ jobs:
             -fno-omit-frame-pointer
             -fsanitize=address
 #            -fsanitize-recover=address
-          ASAN_OPTIONS: detect_leaks=0,detect_odr_violation=1
+          ASAN_OPTIONS: detect_leaks=1,detect_odr_violation=1
 #          MAKEFLAGS: --no-keep-going
       - name: Add the bin directory to PATH
         run: echo "$HOME/install/bin" >> $GITHUB_PATH

From ed3236343dddb3aa274d26eb22609e6961a19f65 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Wed, 25 Jun 2025 16:07:24 -0400
Subject: [PATCH 49/56] Update macos.yml

---
 .github/workflows/macos.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/macos.yml b/.github/workflows/macos.yml
index 5c8efade64d..7817faa20b3 100644
--- a/.github/workflows/macos.yml
+++ b/.github/workflows/macos.yml
@@ -103,7 +103,7 @@ jobs:
             -fno-omit-frame-pointer
             -fsanitize=address
 #            -fsanitize-recover=address
-          ASAN_OPTIONS: detect_leaks=1,detect_odr_violation=1
+          ASAN_OPTIONS: detect_leaks=0,detect_odr_violation=1
 #          MAKEFLAGS: --no-keep-going
       - name: Add the bin directory to PATH
         run: echo "$HOME/install/bin" >> $GITHUB_PATH

From 6e5683daad32c5f5763362278cc4c6f6e61593f8 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Thu, 26 Jun 2025 08:12:23 -0400
Subject: [PATCH 50/56] Update conda-requirements-dev-arm64.txt comment out
 llvm-tools

---
 macos/files/conda-requirements-dev-arm64.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/macos/files/conda-requirements-dev-arm64.txt b/macos/files/conda-requirements-dev-arm64.txt
index 59b1cc9f56a..f9e76b5331d 100644
--- a/macos/files/conda-requirements-dev-arm64.txt
+++ b/macos/files/conda-requirements-dev-arm64.txt
@@ -30,7 +30,7 @@ libsvm
 libtiff
 lld
 llvm-openmp
-llvm-tools
+# llvm-tools
 matplotlib
 numpy<2
 openblas

From 30fd77b4047ddb54b7dedc27180088e9a64d1d18 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Thu, 26 Jun 2025 08:24:43 -0400
Subject: [PATCH 51/56] Update conda-requirements-dev-arm64.txt remove
 llvm-tools

---
 macos/files/conda-requirements-dev-arm64.txt | 1 -
 1 file changed, 1 deletion(-)

diff --git a/macos/files/conda-requirements-dev-arm64.txt b/macos/files/conda-requirements-dev-arm64.txt
index f9e76b5331d..c94d484e0dd 100644
--- a/macos/files/conda-requirements-dev-arm64.txt
+++ b/macos/files/conda-requirements-dev-arm64.txt
@@ -30,7 +30,6 @@ libsvm
 libtiff
 lld
 llvm-openmp
-# llvm-tools
 matplotlib
 numpy<2
 openblas

From 17f52f831053ea3934b7da5ebc200cc95c8d170d Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Thu, 26 Jun 2025 09:15:07 -0400
Subject: [PATCH 52/56] Clean up macos.yml

---
 .github/workflows/macos.yml | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/macos.yml b/.github/workflows/macos.yml
index 7817faa20b3..bb8eb6022a4 100644
--- a/.github/workflows/macos.yml
+++ b/.github/workflows/macos.yml
@@ -81,11 +81,13 @@ jobs:
           $CC --version
       - name: Create installation directory
         run: mkdir $HOME/install
-      - run: which clang
+      - name: Show clang path
         shell: micromamba-shell {0}
+        run: which clang
       - name: Show llvm-symbolizer
         shell: micromamba-shell {0}
         run: which llvm-symbolizer
+      # Commented below are some possible flags to pass to not exit on failures
       - name: Build and install
         shell: micromamba-shell {0}
         run: source ./.github/workflows/macos_install.sh $HOME/install
@@ -104,7 +106,6 @@ jobs:
             -fsanitize=address
 #            -fsanitize-recover=address
           ASAN_OPTIONS: detect_leaks=0,detect_odr_violation=1
-#          MAKEFLAGS: --no-keep-going
       - name: Add the bin directory to PATH
         run: echo "$HOME/install/bin" >> $GITHUB_PATH
       - name: Check installed version

From 0d0be0aa549716b62f409619a2a88c83d677b9a4 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Thu, 26 Jun 2025 09:33:06 -0400
Subject: [PATCH 53/56] Update macos.yml add comment on llvm-symbolizer

---
 .github/workflows/macos.yml | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/.github/workflows/macos.yml b/.github/workflows/macos.yml
index bb8eb6022a4..fc61f9ef969 100644
--- a/.github/workflows/macos.yml
+++ b/.github/workflows/macos.yml
@@ -84,6 +84,8 @@ jobs:
       - name: Show clang path
         shell: micromamba-shell {0}
         run: which clang
+      # llvm-symbolizer, if on path or specified with ASAN_SYMBOLIZER_PATH,
+      # enhances tracebacks with line numbers instead of addresses
       - name: Show llvm-symbolizer
         shell: micromamba-shell {0}
         run: which llvm-symbolizer

From 791c4a1108591d22882faf200a1843a1c0d4a690 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Thu, 26 Jun 2025 09:37:12 -0400
Subject: [PATCH 54/56] Update macos.yml add $G_CFLAGS_APPEND to source command

---
 .github/workflows/macos.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/macos.yml b/.github/workflows/macos.yml
index fc61f9ef969..3f35ef5ef2c 100644
--- a/.github/workflows/macos.yml
+++ b/.github/workflows/macos.yml
@@ -92,7 +92,7 @@ jobs:
       # Commented below are some possible flags to pass to not exit on failures
       - name: Build and install
         shell: micromamba-shell {0}
-        run: source ./.github/workflows/macos_install.sh $HOME/install
+        run: source ./.github/workflows/macos_install.sh $HOME/install $G_CFLAGS_APPEND
         env:
           G_CFLAGS_APPEND: >-
             -g

From 9b63f6e55bcc6ccb3d0c884157b62b1d9f331c93 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Thu, 26 Jun 2025 10:48:58 -0400
Subject: [PATCH 55/56] Update ctypesgen Makefile to add libclang_rt for
 interceptors to work

---
 python/libgrass_interface_generator/Makefile | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/python/libgrass_interface_generator/Makefile b/python/libgrass_interface_generator/Makefile
index c2aa362db56..4db0c00b978 100644
--- a/python/libgrass_interface_generator/Makefile
+++ b/python/libgrass_interface_generator/Makefile
@@ -60,7 +60,7 @@ ifneq ($(MINGW),)
 INTLLIB = -lintl-8
 endif
 
-CTYPESGEN = ./run.py
+CTYPESGEN = DYLD_INSERT_LIBRARIES=/Users/runner/micromamba/envs/grass-env/lib/clang/20/lib/darwin/libclang_rt.asan_osx_dynamic.dylib ./run.py
 CTYPESFLAGS = --no-embed-preamble --strip-build-path "$(ARCH_DISTDIR)" \
 	--cpp "$(CC) -E $(CPPFLAGS) $(LFS_CFLAGS) $(EXTRA_CFLAGS) $(NLS_CFLAGS) $(DEFS) $(EXTRA_INC) $(INC) -D__GLIBC_HAVE_LONG_LONG"
 EXTRA_CLEAN_FILES := $(wildcard ctypesgen/*.pyc) $(wildcard ctypesgen/*/*.pyc)

From 43de0fe8832ec3b350390549544129c1f36e8914 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edouard=20Choini=C3=A8re?=
 <27212526+echoix@users.noreply.github.com>
Date: Thu, 26 Jun 2025 11:42:57 -0400
Subject: [PATCH 56/56] Update macos.yml compile with env
 DYLD_INSERT_LIBRARIES=/Users/runner/micromamba/envs/grass-env/lib/clang/20/lib/darwin/libclang_rt.asan_osx_dynamic.dylib

---
 .github/workflows/macos.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/macos.yml b/.github/workflows/macos.yml
index 3f35ef5ef2c..ac3ed0ad0b1 100644
--- a/.github/workflows/macos.yml
+++ b/.github/workflows/macos.yml
@@ -108,6 +108,7 @@ jobs:
             -fsanitize=address
 #            -fsanitize-recover=address
           ASAN_OPTIONS: detect_leaks=0,detect_odr_violation=1
+          DYLD_INSERT_LIBRARIES: /Users/runner/micromamba/envs/grass-env/lib/clang/20/lib/darwin/libclang_rt.asan_osx_dynamic.dylib
       - name: Add the bin directory to PATH
         run: echo "$HOME/install/bin" >> $GITHUB_PATH
       - name: Check installed version