pyradiomics-torch/.pre-commit-config.yaml at master · donglihe-hub/pyradiomics-torch · GitHub

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ci:
  autoupdate_commit_msg: "chore: update pre-commit hooks"
  autofix_commit_msg: "style: pre-commit fixes"

exclude: ^.cruft.json|.copier-answers.yml$

repos:
  - repo: https://github.com/adamchainz/blacken-docs
    rev: "1.19.1"
    hooks:
      - id: blacken-docs
        additional_dependencies: [black==24.*]

  - repo: https://github.com/pre-commit/pre-commit-hooks
    rev: "v5.0.0"
    hooks:
      - id: check-added-large-files
        args: ['--maxkb=1024']
      - id: check-case-conflict
      - id: check-executables-have-shebangs
      - id: check-merge-conflict
      - id: check-symlinks
      - id: check-toml
      #- id: check-yaml  # See Issue #899 (https://github.com/AIM-Harvard/pyradiomics/issues/899)
      - id: debug-statements
      - id: detect-private-key
      - id: end-of-file-fixer
        exclude: "\\.(md5|sha|sha512|svg|vtk|vtp)$|^Resources\\/[^\\/]+\\.h$|\\/ColorFiles\\/.+\\.txt$|Data\\/Input\\/.+$"
      - id: forbid-new-submodules
      - id: mixed-line-ending
        exclude: "\\.(sha|sha512|svg|vtk|vtp)$"
      #- id: name-tests-test  # See Issue #899 (https://github.com/AIM-Harvard/pyradiomics/issues/899)
      #  args: ["--pytest-test-first"]
      - id: requirements-txt-fixer
      #- id: trailing-whitespace  # See Issue #899 (https://github.com/AIM-Harvard/pyradiomics/issues/899)
  - repo: https://github.com/psf/black-pre-commit-mirror
    # need to keep version for black in .pre-commit-config.yaml, requirements_dev.txt, and .github/workflows/prostatid_ci.yml
    rev: 24.2.0
    hooks:
      - id: black

  - repo: https://github.com/pre-commit/pygrep-hooks
    rev: "v1.10.0"
    hooks:
      #- id: rst-backticks  # See Issue #899 (https://github.com/AIM-Harvard/pyradiomics/issues/899)
      - id: rst-directive-colons
      - id: rst-inline-touching-normal

  # See Issue #899 (https://github.com/AIM-Harvard/pyradiomics/issues/899)

  #- repo: https://github.com/rbubley/mirrors-prettier
  #  rev: "v3.4.2"
  #  hooks:
  #    - id: prettier
  #      types_or: [yaml, markdown, html, css, scss, javascript, json]
  #      args: [--prose-wrap=always]

  - repo: https://github.com/astral-sh/ruff-pre-commit
    rev: "v0.11.9"
    hooks:
      - id: ruff
        args: ["--fix", "--show-fixes"]

  #- repo: https://github.com/pre-commit/mirrors-clang-format
  #  rev: "v19.1.7"
  #  hooks:
  #    - id: clang-format
  #      types_or: [c++, c, cuda]

  - repo: https://github.com/pre-commit/mirrors-mypy
    rev: "v1.15.0"
    hooks:
      - id: mypy
        files: src|tests
        # Ignore all current errors, these suppressions should be removed eventually
        args: [
          '--disable-error-code=no-redef',
          '--disable-error-code=unreachable',
          '--disable-error-code=assignment',
          '--disable-error-code=index',
          '--disable-error-code=attr-defined',
          '--disable-error-code=no-untyped-call' ,
          '--disable-error-code=var-annotated' ,
          '--disable-error-code=no-untyped-def',
          '--disable-error-code=import-not-found',
        ]
        additional_dependencies:
          - pytest

  - repo: https://github.com/codespell-project/codespell
    rev: "v2.4.1"
    hooks:
      - id: codespell
        files: '^.*\.(py|c|h|md|rst|yml)$'
        args: [ "--ignore-words", ".codespellignore" ]

  - repo: https://github.com/hukkin/mdformat
    rev: 0.7.22  # Use the ref you want to point at
    hooks:
    - id: mdformat
      # Optionally add plugins
      additional_dependencies:
      - mdformat-gfm
      - mdformat-black

  #- repo: https://github.com/shellcheck-py/shellcheck-py
  #  rev: "v0.10.0.1"
  #  hooks:
  #    - id: shellcheck

  #- repo: local
  #  hooks:
  #    - id: disallow-caps
  #      name: Disallow improper capitalization
  #      language: pygrep
  #      entry: PyBind|Numpy|Cmake|CCache|Github|PyTest
  #      exclude: .pre-commit-config.yaml

  #- repo: https://github.com/cheshirekow/cmake-format-precommit
  #  rev: "v0.6.13"
  #  hooks:
  #    - id: cmake-format

  - repo: https://github.com/abravalheri/validate-pyproject
    rev: "v0.23"
    hooks:
      - id: validate-pyproject
        additional_dependencies: ["validate-pyproject-schema-store[all]"]

  - repo: https://github.com/python-jsonschema/check-jsonschema
    rev: "0.31.0"
    hooks:
      - id: check-dependabot
      - id: check-github-workflows
      - id: check-readthedocs