From 01519c4e35ccaf2de465b2c4bcd958c4cc0efdd1 Mon Sep 17 00:00:00 2001 From: N Tessa Pierce Date: Fri, 8 May 2020 17:40:43 -0700 Subject: [PATCH 1/2] init reporting --- dammit/workflows/dammit.snakefile | 1 + 1 file changed, 1 insertion(+) diff --git a/dammit/workflows/dammit.snakefile b/dammit/workflows/dammit.snakefile index 60e320f2..20755b9b 100644 --- a/dammit/workflows/dammit.snakefile +++ b/dammit/workflows/dammit.snakefile @@ -14,6 +14,7 @@ benchmarks = config.get("benchmark_dir", "benchmarks") benchmarks_dir = os.path.join(results_dir, benchmarks) db_dir = config['db_dir'] +report: config.get("report_file", "dammit_report.rst") onstart: print("------------------------------") From 42c25ac85cadc513d9d9c92bf46aaeadd661e696 Mon Sep 17 00:00:00 2001 From: N Tessa Pierce Date: Fri, 8 May 2020 17:47:08 -0700 Subject: [PATCH 2/2] set default report file in config.yml --- dammit/config.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/dammit/config.yml b/dammit/config.yml index 74d01d7c..b0fb1627 100644 --- a/dammit/config.yml +++ b/dammit/config.yml @@ -2,6 +2,7 @@ dammit_dir: .dammit db_dir: databases logs_dir: logs input_transcriptome: "test.fa" +report_file: dammit_annotation_report.rst ## last ## lastal: