diff --git a/dammit/config.yml b/dammit/config.yml index 74d01d7c..b0fb1627 100644 --- a/dammit/config.yml +++ b/dammit/config.yml @@ -2,6 +2,7 @@ dammit_dir: .dammit db_dir: databases logs_dir: logs input_transcriptome: "test.fa" +report_file: dammit_annotation_report.rst ## last ## lastal: diff --git a/dammit/workflows/dammit.snakefile b/dammit/workflows/dammit.snakefile index 60e320f2..20755b9b 100644 --- a/dammit/workflows/dammit.snakefile +++ b/dammit/workflows/dammit.snakefile @@ -14,6 +14,7 @@ benchmarks = config.get("benchmark_dir", "benchmarks") benchmarks_dir = os.path.join(results_dir, benchmarks) db_dir = config['db_dir'] +report: config.get("report_file", "dammit_report.rst") onstart: print("------------------------------")