scvi-tools import error #25
Description
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Hi hnoca team!
First off, thank you for developing this great package. I've been using this for some time now, but encountered a bug that I monkeypatched for now. Should be an easy fix.
I load my SCANVI model
lvae = scvi.model.SCANVI.load(
"path/to/scanvi/model",
adata=train_adata,
)
and run
mapper = mapping.AtlasMapper(lvae)
I get this error:
---------------------------------------------------------------------------
ModuleNotFoundError Traceback (most recent call last)
File /hpc/pmc_rios/2.personal/rariese/miniconda/envs/scvi/lib/python3.11/site-packages/hnoca/utils/check.py:63, in ModuleChecker.check(self)
62 try:
---> 63 importlib.import_module(self.name)
64 except ModuleNotFoundError as e:
File /hpc/pmc_rios/2.personal/rariese/miniconda/envs/scvi/lib/python3.11/importlib/__init__.py:126, in import_module(name, package)
125 level += 1
--> 126 return _bootstrap._gcd_import(name[level:], package, level)
File <frozen importlib._bootstrap>:1204, in _gcd_import(name, package, level)
File <frozen importlib._bootstrap>:1176, in _find_and_load(name, import_)
File <frozen importlib._bootstrap>:1140, in _find_and_load_unlocked(name, import_)
ModuleNotFoundError: No module named 'scvi-tools'
The above exception was the direct cause of the following exception:
RuntimeError Traceback (most recent call last)
Cell In[29], line 1
----> 1 mapper = mapping.AtlasMapper(lvae)
2 mapper.map_query(query, retrain="partial", max_epochs=100, batch_size=1024)
File /hpc/pmc_rios/2.personal/rariese/miniconda/envs/scvi/lib/python3.11/site-packages/hnoca/mapping/mapper.py:35, in AtlasMapper.__init__(self, ref_model)
28 """
29 Initialize the AtlasMapper object
30
31 Args:
32 ref_model: The reference model to map the query dataset to.
33 """
34 # Check optional dependencies
---> 35 check_deps("scvi-tools")
36 check_deps("scarches")
37 # Import and store as attributes so other methods can use them
File /hpc/pmc_rios/2.personal/rariese/miniconda/envs/scvi/lib/python3.11/site-packages/hnoca/utils/check.py:106, in check_deps(*args)
97 r"""
98 Check whether certain dependencies are installed
99
(...) 103 A list of dependencies to check
104 """
105 for item in args:
--> 106 CHECKERS[item].check()
File /hpc/pmc_rios/2.personal/rariese/miniconda/envs/scvi/lib/python3.11/site-packages/hnoca/utils/check.py:65, in ModuleChecker.check(self)
63 importlib.import_module(self.name)
64 except ModuleNotFoundError as e:
---> 65 raise RuntimeError(" ".join(filter(None, [self.vreq_hint, self.install_hint]))) from e
66 v = parse(version(self.package_name))
67 if self.vmin and v < self.vmin:
RuntimeError: This function relies on scvi-tools (>=1.2). Please install scvi-tools, either directly or via the corresponding hnoca extra: `pip install 'hnoca[mapping]'`.
This checks versioning of the scvi-tools package, but in Python it is imported as 'scvi'. I patched it for now using
import hnoca.utils.check as _chk
if 'scvi-tools' in _chk.CHECKERS:
_chk.CHECKERS['scvi-tools'].name = 'scvi'
and it runs beautiful!
Cheers,
Rijndert
Versions
<table class=table>
<thead style="position: sticky; top: 0; background-color: var(--jp-layout-color0, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));">
<tr><th>Package</th><th>Version</th></tr>
</thead>
<tbody>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td><strong>pandas</strong></td><td>2.3.3</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td><strong>numpy</strong></td><td>1.26.4</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td><strong>anndata</strong></td><td>0.12.4</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td><strong>torch</strong></td><td>2.9.0 (2.9.0+cu128)</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td><strong>scvi-tools</strong></td><td>1.4.0.post1</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td><strong>scanpy</strong></td><td>1.11.5</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td><strong>matplotlib</strong></td><td>3.10.7</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td><strong>seaborn</strong></td><td>0.13.2</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td><strong>hnoca</strong></td><td>0.2.1</td></tr>
</tbody>
<thead style="position: sticky; top: 0; background-color: var(--jp-layout-color0, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));">
<tr><th>Component</th><th>Info</th></tr>
</thead>
<tbody>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>Python</td><td>3.11.14 | packaged by conda-forge | (main, Oct 22 2025, 22:46:25) [GCC 14.3.0]</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>OS</td><td>Linux-4.18.0-553.77.1.el8_10.x86_64-x86_64-with-glibc2.31</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>Updated</td><td>2025-10-29 15:59</td></tr>
</tbody>
</table>
<details>
<summary>Dependencies</summary>
<div style="max-height: min(500px, 80vh); overflow-y: auto;">
<table class=table>
<thead style="position: sticky; top: 0; background-color: var(--jp-layout-color0, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));">
<tr><th>Dependency</th><th>Version</th></tr>
</thead>
<tbody>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>numba</td><td>0.62.1</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>opt_einsum</td><td>3.4.0</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>Jinja2</td><td>3.1.6</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>comm</td><td>0.2.3</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>legacy-api-wrap</td><td>1.4.1</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>prompt_toolkit</td><td>3.0.52</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>jaxlib</td><td>0.7.1</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>chex</td><td>0.1.91</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>statsmodels</td><td>0.14.5</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>torchmetrics</td><td>1.8.2</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>donfig</td><td>0.8.1.post1</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>cuml-cu12</td><td>25.10.0 (25.10.00)</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>pycparser</td><td>2.23</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>nvidia-cudnn-cu12</td><td>9.10.2.21</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>pyzmq</td><td>27.1.0</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>PyYAML</td><td>6.0.3</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>pexpect</td><td>4.9.0</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>jupyter_client</td><td>8.6.3</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>pyro-ppl</td><td>1.9.1</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>rapids-dask-dependency</td><td>25.10.0</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>jax</td><td>0.7.1</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>nvidia-nvtx-cu12</td><td>12.8.90</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>nvidia-nvshmem-cu12</td><td>3.3.20</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>cuda-bindings</td><td>12.9.4</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>executing</td><td>2.2.1</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>nvidia-cufile-cu12</td><td>1.13.1.3</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>ipykernel</td><td>7.0.1</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>llvmlite</td><td>0.45.1</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>nvidia-cusparse-cu12</td><td>12.5.8.93</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>natsort</td><td>8.4.0</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>jupyter_core</td><td>5.9.1</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>pyparsing</td><td>3.2.5</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>crc32c</td><td>2.8</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>multipledispatch</td><td>1.0.0 (0.6.0)</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>h5py</td><td>3.15.1</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>cffi</td><td>2.0.0</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>igraph</td><td>0.11.9</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>jax-cuda12-pjrt</td><td>0.8.0</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>scikit-learn</td><td>1.7.2</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>scikit-misc</td><td>0.5.1</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>rapids-logger</td><td>0.1.19</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>pynndescent</td><td>0.5.13</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>typing_extensions</td><td>4.15.0</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>stack-data</td><td>0.6.3</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>cuda-core</td><td>0.3.2 (12.9.4)</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>lightning</td><td>2.5.5</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>traitlets</td><td>5.14.3</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>joblib</td><td>1.5.2</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>libcuml-cu12</td><td>25.10.0 (25.10.00)</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>pillow</td><td>12.0.0</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>lightning-utilities</td><td>0.15.2</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>zipp</td><td>3.23.0</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>nvidia-cuda-nvcc-cu12</td><td>12.9.86</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>docrep</td><td>0.3.2</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>cachetools</td><td>6.2.1</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>xarray</td><td>2025.10.1</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>libkvikio-cu12</td><td>25.10.0 (25.10.00)</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>torchvision</td><td>0.24.0 (0.24.0+cu128)</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>asttokens</td><td>3.0.0</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>MarkupSafe</td><td>3.0.3</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>setuptools</td><td>80.9.0</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>session-info2</td><td>0.2.3</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>parso</td><td>0.8.5</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>rich</td><td>14.2.0</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>defusedxml</td><td>0.7.1</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>texttable</td><td>1.7.0</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>nvidia-cuda-runtime-cu12</td><td>12.8.90</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>threadpoolctl</td><td>3.6.0</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>sparse</td><td>0.17.0</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>leidenalg</td><td>0.10.2</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>nvidia-nccl-cu12</td><td>2.27.5</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>Pygments</td><td>2.19.2</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>mudata</td><td>0.3.2</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>attrs</td><td>25.4.0</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>debugpy</td><td>1.8.17</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>six</td><td>1.17.0</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>decorator</td><td>5.2.1</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>platformdirs</td><td>4.5.0</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>nvidia-cuda-nvrtc-cu12</td><td>12.8.93</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>optax</td><td>0.2.6</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>pytz</td><td>2025.2</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>jedi</td><td>0.19.2</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>libcudf-cu12</td><td>25.10.0 (25.10.00)</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>cupy-cuda12x</td><td>13.6.0</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>importlib_metadata</td><td>8.7.0</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>mpmath</td><td>1.3.0</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>wcwidth</td><td>0.2.14</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>rmm-cu12</td><td>25.10.0 (25.10.00)</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>zarr</td><td>3.1.3</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>absl-py</td><td>2.3.1</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>msgpack</td><td>1.1.2</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>libraft-cu12</td><td>25.10.0 (25.10.00)</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>matplotlib-inline</td><td>0.2.1</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>librmm-cu12</td><td>25.10.0 (25.10.00)</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>cycler</td><td>0.12.1</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>importlib_resources</td><td>6.5.2</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>jax-cuda12-plugin</td><td>0.8.0</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>etils</td><td>1.13.0</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>pylibraft-cu12</td><td>25.10.0 (25.10.00)</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>pure_eval</td><td>0.2.3</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>triton</td><td>3.5.0</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>dask</td><td>2025.9.1</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>numcodecs</td><td>0.16.3</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>pyarrow</td><td>22.0.0</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>fsspec</td><td>2025.9.0</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>kiwisolver</td><td>1.4.9</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>ipython</td><td>9.6.0</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>nvidia-cufft-cu12</td><td>11.3.3.83</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>nvtx</td><td>0.2.13</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>nvidia-cusolver-cu12</td><td>11.7.3.90</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>filelock</td><td>3.20.0</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>tblib</td><td>3.2.0</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>treelite</td><td>4.4.1</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>cloudpickle</td><td>3.1.1</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>tornado</td><td>6.5.2</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>cuda-pathfinder</td><td>1.3.1 (12.9.4)</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>python-dateutil</td><td>2.9.0.post0</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>toolz</td><td>1.1.0</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>cudf-cu12</td><td>25.10.0 (25.10.00)</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>nvidia-cuda-cccl-cu12</td><td>12.9.27</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>nvidia-cuda-cupti-cu12</td><td>12.8.90</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>ml_dtypes</td><td>0.5.3</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>nvidia-curand-cu12</td><td>10.3.9.90</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>ml_collections</td><td>1.1.0</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>sympy</td><td>1.14.0</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>psutil</td><td>7.1.2</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>patsy</td><td>1.0.2</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>nvidia-nvjitlink-cu12</td><td>12.8.93</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>tqdm</td><td>4.67.1</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>nvidia-ml-py</td><td>13.580.82</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>flax</td><td>0.12.0</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>fastrlock</td><td>0.8.3</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>nvidia-cublas-cu12</td><td>12.8.4.1</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>pylibcudf-cu12</td><td>25.10.0</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>packaging</td><td>25.0</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>scipy</td><td>1.16.3</td></tr>
<tr style="background-color: var(--jp-layout-color1, var(--vscode-editor-background, #f8f9fa)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>ptyprocess</td><td>0.7.0</td></tr>
<tr style="background-color: var(--jp-layout-color2, var(--vscode-tree-tableOddRowsBackground, #f1f3f4)); color: var(--jp-ui-font-color1, var(--vscode-editor-foreground, #212529));"><td>numpyro</td><td>0.19.0</td></tr>
</tbody>
</table>
</div>
</details>
<details>
<summary>Copyable Markdown</summary>
<pre>| Package | Version |
| ---------- | ------------------- |
| pandas | 2.3.3 |
| numpy | 1.26.4 |
| anndata | 0.12.4 |
| torch | 2.9.0 (2.9.0+cu128) |
| scvi-tools | 1.4.0.post1 |
| scanpy | 1.11.5 |
| matplotlib | 3.10.7 |
| seaborn | 0.13.2 |
| hnoca | 0.2.1 |
| Dependency | Version |
| ------------------------ | --------------------- |
| numba | 0.62.1 |
| opt_einsum | 3.4.0 |
| Jinja2 | 3.1.6 |
| comm | 0.2.3 |
| legacy-api-wrap | 1.4.1 |
| prompt_toolkit | 3.0.52 |
| jaxlib | 0.7.1 |
| chex | 0.1.91 |
| statsmodels | 0.14.5 |
| torchmetrics | 1.8.2 |
| donfig | 0.8.1.post1 |
| cuml-cu12 | 25.10.0 (25.10.00) |
| pycparser | 2.23 |
| nvidia-cudnn-cu12 | 9.10.2.21 |
| pyzmq | 27.1.0 |
| PyYAML | 6.0.3 |
| pexpect | 4.9.0 |
| jupyter_client | 8.6.3 |
| pyro-ppl | 1.9.1 |
| rapids-dask-dependency | 25.10.0 |
| jax | 0.7.1 |
| nvidia-nvtx-cu12 | 12.8.90 |
| nvidia-nvshmem-cu12 | 3.3.20 |
| cuda-bindings | 12.9.4 |
| executing | 2.2.1 |
| nvidia-cufile-cu12 | 1.13.1.3 |
| ipykernel | 7.0.1 |
| llvmlite | 0.45.1 |
| nvidia-cusparse-cu12 | 12.5.8.93 |
| natsort | 8.4.0 |
| jupyter_core | 5.9.1 |
| pyparsing | 3.2.5 |
| crc32c | 2.8 |
| multipledispatch | 1.0.0 (0.6.0) |
| h5py | 3.15.1 |
| cffi | 2.0.0 |
| igraph | 0.11.9 |
| jax-cuda12-pjrt | 0.8.0 |
| scikit-learn | 1.7.2 |
| scikit-misc | 0.5.1 |
| rapids-logger | 0.1.19 |
| pynndescent | 0.5.13 |
| typing_extensions | 4.15.0 |
| stack-data | 0.6.3 |
| cuda-core | 0.3.2 (12.9.4) |
| lightning | 2.5.5 |
| traitlets | 5.14.3 |
| joblib | 1.5.2 |
| libcuml-cu12 | 25.10.0 (25.10.00) |
| pillow | 12.0.0 |
| lightning-utilities | 0.15.2 |
| zipp | 3.23.0 |
| nvidia-cuda-nvcc-cu12 | 12.9.86 |
| docrep | 0.3.2 |
| cachetools | 6.2.1 |
| xarray | 2025.10.1 |
| libkvikio-cu12 | 25.10.0 (25.10.00) |
| torchvision | 0.24.0 (0.24.0+cu128) |
| asttokens | 3.0.0 |
| MarkupSafe | 3.0.3 |
| setuptools | 80.9.0 |
| session-info2 | 0.2.3 |
| parso | 0.8.5 |
| rich | 14.2.0 |
| defusedxml | 0.7.1 |
| texttable | 1.7.0 |
| nvidia-cuda-runtime-cu12 | 12.8.90 |
| threadpoolctl | 3.6.0 |
| sparse | 0.17.0 |
| leidenalg | 0.10.2 |
| nvidia-nccl-cu12 | 2.27.5 |
| Pygments | 2.19.2 |
| mudata | 0.3.2 |
| attrs | 25.4.0 |
| debugpy | 1.8.17 |
| six | 1.17.0 |
| decorator | 5.2.1 |
| platformdirs | 4.5.0 |
| nvidia-cuda-nvrtc-cu12 | 12.8.93 |
| optax | 0.2.6 |
| pytz | 2025.2 |
| jedi | 0.19.2 |
| libcudf-cu12 | 25.10.0 (25.10.00) |
| cupy-cuda12x | 13.6.0 |
| importlib_metadata | 8.7.0 |
| mpmath | 1.3.0 |
| wcwidth | 0.2.14 |
| rmm-cu12 | 25.10.0 (25.10.00) |
| zarr | 3.1.3 |
| absl-py | 2.3.1 |
| msgpack | 1.1.2 |
| libraft-cu12 | 25.10.0 (25.10.00) |
| matplotlib-inline | 0.2.1 |
| librmm-cu12 | 25.10.0 (25.10.00) |
| cycler | 0.12.1 |
| importlib_resources | 6.5.2 |
| jax-cuda12-plugin | 0.8.0 |
| etils | 1.13.0 |
| pylibraft-cu12 | 25.10.0 (25.10.00) |
| pure_eval | 0.2.3 |
| triton | 3.5.0 |
| dask | 2025.9.1 |
| numcodecs | 0.16.3 |
| pyarrow | 22.0.0 |
| fsspec | 2025.9.0 |
| kiwisolver | 1.4.9 |
| ipython | 9.6.0 |
| nvidia-cufft-cu12 | 11.3.3.83 |
| nvtx | 0.2.13 |
| nvidia-cusolver-cu12 | 11.7.3.90 |
| filelock | 3.20.0 |
| tblib | 3.2.0 |
| treelite | 4.4.1 |
| cloudpickle | 3.1.1 |
| tornado | 6.5.2 |
| cuda-pathfinder | 1.3.1 (12.9.4) |
| python-dateutil | 2.9.0.post0 |
| toolz | 1.1.0 |
| cudf-cu12 | 25.10.0 (25.10.00) |
| nvidia-cuda-cccl-cu12 | 12.9.27 |
| nvidia-cuda-cupti-cu12 | 12.8.90 |
| ml_dtypes | 0.5.3 |
| nvidia-curand-cu12 | 10.3.9.90 |
| ml_collections | 1.1.0 |
| sympy | 1.14.0 |
| psutil | 7.1.2 |
| patsy | 1.0.2 |
| nvidia-nvjitlink-cu12 | 12.8.93 |
| tqdm | 4.67.1 |
| nvidia-ml-py | 13.580.82 |
| flax | 0.12.0 |
| fastrlock | 0.8.3 |
| nvidia-cublas-cu12 | 12.8.4.1 |
| pylibcudf-cu12 | 25.10.0 |
| packaging | 25.0 |
| scipy | 1.16.3 |
| ptyprocess | 0.7.0 |
| numpyro | 0.19.0 |
| Component | Info |
| --------- | ------------------------------------------------------------------------------ |
| Python | 3.11.14 | packaged by conda-forge | (main, Oct 22 2025, 22:46:25) [GCC 14.3.0] |
| OS | Linux-4.18.0-553.77.1.el8_10.x86_64-x86_64-with-glibc2.31 |
| Updated | 2025-10-29 15:59 |</pre>
</details>