Initial feedback user story 1 - datacenter-publication-citations

[mfenner]

• Pangaea is not yet submitting views and downloads to DataCite, so this information could be left out. dryad.dryad has usage stats, and gbif.gbif has lots of citations (the occurrences that you also have in your output). Maybe show two or three repositories to show different patterns? You could have them all in one GraphQL query, but need to alias them, e.g.

pangaea: repository(id: $repository) {
  id
  name
}
gbif: repository(id: $repository) {
  id
  name
}

• fetch the aggregate citation count over the whole repository and/or a specific query. There are issues with generating the numbers, but that is up to me.
• Generate a downloadable bibtex file (just contact the individual bibtex entries into a single file with extension .bib).
• consider a query term with more hits, e.g. polarstern (a research vessel from the same institution that also hosts Pangaea). Or show aggregated numbers for the whole repository.

[datasome]

@mfenner, I have addressed all the issues - please see below:

Item	Status	Comment
show two or three repositories to show different patterns? You could have them all in one GraphQL query, but need to alias them	Done	Included all of pangaea, dryad.dryad and gbif.gbif in the query, and for all of the generated: 1. bar plots; 2. html tables of works by query and 3. Allow user to download BibTeX files (see below)
fetch the aggregate citation count over the whole repository and/or a specific query. There are issues with generating the numbers, but that is up to me.	Done	As you say, they are currently 0 for each of the three repositories
consider a query term with more hits, e.g. polarstern	Done	Now use 'polarstern' for pangaea, and other queries with lots of hits for dryad.dryad and gbif.gbif respectively.
Generate a downloadable bibtex file	Done	As suggested elswhere, the user can now download one BibTeX file of works per repository; and a BibTeX file of all citations of a given work. I have tested the format of the downloaded BibTeX files via bibtool, see below:

# Parses the file correctly and displays all formatted entries
bibtool dryad.dryad_butterfly.bib
# Does not display any rouge characters (and also checks for duplicates and returns none):
bibtool -- 'unique.field {doi}' -o '' dryad.dryad_butterfly.bib 

[datasome]

@mfenner, I have now documented in Markdown the notebook for user story 1. Please note that the top Markdown table appears borderless in Jupyter lab and mybinder.org, but somehow not in github.