From 8c350cbcf4e359a567a74a6c52bde5fb4de33b98 Mon Sep 17 00:00:00 2001
From: GitHub Actions <actions@github.com>
Date: Tue, 22 Oct 2024 00:25:15 +0000
Subject: [PATCH] site deploy

Auto-generated via `{sandpaper}`
Source  : 2fea52463b280fbf999ab433952e1e922677292b
Branch  : md-outputs
Author  : GitHub Actions <actions@github.com>
Time    : 2024-06-07 13:42:11 +0000
Message : markdown source builds

Auto-generated via {sandpaper}
Source  : 564ffcd7aa54ea908ecc35bdfced36cbb067f464
Branch  : main
Author  : JCSzamosi <4465403+JCSzamosi@users.noreply.github.com>
Time    : 2024-06-07 13:41:27 +0000
Message : Merge pull request #164 from asntech/patch-1

Link to setup.html throws 404: fixes link to setup instructions.
---
 01-tidiness.html                    |  4 ++--
 02-project-planning.html            |  8 ++++----
 03-ncbi-sra.html                    |  6 +++---
 404.html                            |  6 +++---
 CODE_OF_CONDUCT.html                |  4 ++--
 LICENSE.html                        |  4 ++--
 aio.html                            | 12 ++++++------
 data.html                           |  4 ++--
 discuss.html                        |  4 ++--
 images.html                         |  6 +++---
 index.html                          |  6 +++---
 instructor-notes.html               |  6 +++---
 instructor/01-tidiness.html         |  4 ++--
 instructor/02-project-planning.html |  8 ++++----
 instructor/03-ncbi-sra.html         |  6 +++---
 instructor/404.html                 |  6 +++---
 instructor/CODE_OF_CONDUCT.html     |  4 ++--
 instructor/LICENSE.html             |  4 ++--
 instructor/aio.html                 | 12 ++++++------
 instructor/data.html                |  4 ++--
 instructor/discuss.html             |  4 ++--
 instructor/images.html              |  6 +++---
 instructor/index.html               |  6 +++---
 instructor/instructor-notes.html    |  6 +++---
 instructor/key-points.html          |  6 +++---
 instructor/old-ncbi.html            |  4 ++--
 instructor/profiles.html            |  6 +++---
 instructor/reference.html           |  4 ++--
 key-points.html                     |  6 +++---
 old-ncbi.html                       |  4 ++--
 pkgdown.yml                         |  2 +-
 profiles.html                       |  6 +++---
 reference.html                      |  4 ++--
 33 files changed, 91 insertions(+), 91 deletions(-)

diff --git a/01-tidiness.html b/01-tidiness.html
index c48ce90c..9e8a417d 100644
--- a/01-tidiness.html
+++ b/01-tidiness.html
@@ -562,7 +562,7 @@ <h3 class="callout-title">Key Points</h3>
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.8" class="external-link">sandpaper (0.16.8)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.9" class="external-link">sandpaper (0.16.9)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -585,7 +585,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://datacarpentry.github.io/organization-genomics/01-tidiness.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-06-14",
-  "datePublished": "2024-10-15"
+  "datePublished": "2024-10-22"
 }
 
   </script><script>
diff --git a/02-project-planning.html b/02-project-planning.html
index ee1c0729..a1033d5a 100644
--- a/02-project-planning.html
+++ b/02-project-planning.html
@@ -385,7 +385,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>Errors:</p>
 <ul><li>Sequential order of well_position changes</li>
@@ -445,7 +445,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li>Samples are organized by sample_id</li>
 <li>To relate filenames use the sample_id, and do a VLOOKUP on
@@ -576,7 +576,7 @@ <h3 class="callout-title">Key Points</h3>
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.8" class="external-link">sandpaper (0.16.8)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.9" class="external-link">sandpaper (0.16.9)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -599,7 +599,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://datacarpentry.github.io/organization-genomics/02-project-planning.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2024-04-04",
-  "datePublished": "2024-10-15"
+  "datePublished": "2024-10-22"
 }
 
   </script><script>
diff --git a/03-ncbi-sra.html b/03-ncbi-sra.html
index 74d89040..3076a4e2 100644
--- a/03-ncbi-sra.html
+++ b/03-ncbi-sra.html
@@ -468,7 +468,7 @@ <h3 class="callout-title">Discussion</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li>Escherichia coli B str. REL606 shown under the “organism” column.
 This is a tricky question because the column labeled “strain” actually
@@ -578,7 +578,7 @@ <h3 class="callout-title">Key Points</h3>
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.8" class="external-link">sandpaper (0.16.8)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.9" class="external-link">sandpaper (0.16.9)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -601,7 +601,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://datacarpentry.github.io/organization-genomics/03-ncbi-sra.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-11-20",
-  "datePublished": "2024-10-15"
+  "datePublished": "2024-10-22"
 }
 
   </script><script>
diff --git a/404.html b/404.html
index 8c157e06..615c66ce 100644
--- a/404.html
+++ b/404.html
@@ -309,7 +309,7 @@ <h1>Page not found</h1>
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.8" class="external-link">sandpaper (0.16.8)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.9" class="external-link">sandpaper (0.16.9)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -331,8 +331,8 @@ <h1>Page not found</h1>
   "url": "https://datacarpentry.github.io/organization-genomics/404.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/404.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-10-15",
-  "datePublished": "2024-10-15"
+  "dateModified": "2024-10-22",
+  "datePublished": "2024-10-22"
 }
 
   </script><script>
diff --git a/CODE_OF_CONDUCT.html b/CODE_OF_CONDUCT.html
index 3f211c28..a8e12ea1 100644
--- a/CODE_OF_CONDUCT.html
+++ b/CODE_OF_CONDUCT.html
@@ -335,7 +335,7 @@ <h1>Contributor Code of Conduct</h1>
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.8" class="external-link">sandpaper (0.16.8)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.9" class="external-link">sandpaper (0.16.9)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -358,7 +358,7 @@ <h1>Contributor Code of Conduct</h1>
   "identifier": "https://datacarpentry.github.io/organization-genomics/CODE_OF_CONDUCT.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-10-15"
+  "datePublished": "2024-10-22"
 }
 
   </script><script>
diff --git a/LICENSE.html b/LICENSE.html
index 7fbaab9a..3edc4b8d 100644
--- a/LICENSE.html
+++ b/LICENSE.html
@@ -383,7 +383,7 @@ <h1>Licenses</h1>
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.8" class="external-link">sandpaper (0.16.8)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.9" class="external-link">sandpaper (0.16.9)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -406,7 +406,7 @@ <h1>Licenses</h1>
   "identifier": "https://datacarpentry.github.io/organization-genomics/LICENSE.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-10-15"
+  "datePublished": "2024-10-22"
 }
 
   </script><script>
diff --git a/aio.html b/aio.html
index 88a9e064..e0b285c7 100644
--- a/aio.html
+++ b/aio.html
@@ -669,7 +669,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>Errors:</p>
 <ul>
@@ -743,7 +743,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <ol style="list-style-type: decimal">
 <li>Samples are organized by sample_id</li>
@@ -1037,7 +1037,7 @@ <h3 class="callout-title">Discussion</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <ol style="list-style-type: decimal">
 <li>Escherichia coli B str. REL606 shown under the “organism” column.
@@ -1151,7 +1151,7 @@ <h3 class="callout-title">Key Points</h3>
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.8" class="external-link">sandpaper (0.16.8)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.9" class="external-link">sandpaper (0.16.9)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer>
 </div> <!-- / div.container -->
@@ -1174,8 +1174,8 @@ <h3 class="callout-title">Key Points</h3>
   "url": "https://datacarpentry.github.io/organization-genomics/aio.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/aio.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-10-15",
-  "datePublished": "2024-10-15"
+  "dateModified": "2024-10-22",
+  "datePublished": "2024-10-22"
 }
 
   </script><script>
diff --git a/data.html b/data.html
index 390ad054..8628a4d5 100644
--- a/data.html
+++ b/data.html
@@ -415,7 +415,7 @@ <h2 id="references">References<a class="anchor" aria-label="anchor" href="#refer
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.8" class="external-link">sandpaper (0.16.8)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.9" class="external-link">sandpaper (0.16.9)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -438,7 +438,7 @@ <h2 id="references">References<a class="anchor" aria-label="anchor" href="#refer
   "identifier": "https://datacarpentry.github.io/organization-genomics/data.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-10-15"
+  "datePublished": "2024-10-22"
 }
 
   </script><script>
diff --git a/discuss.html b/discuss.html
index 7d7000ea..942cb7ae 100644
--- a/discuss.html
+++ b/discuss.html
@@ -328,7 +328,7 @@ <h1>Discussion</h1>
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.8" class="external-link">sandpaper (0.16.8)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.9" class="external-link">sandpaper (0.16.9)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -351,7 +351,7 @@ <h1>Discussion</h1>
   "identifier": "https://datacarpentry.github.io/organization-genomics/discuss.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-10-15"
+  "datePublished": "2024-10-22"
 }
 
   </script><script>
diff --git a/images.html b/images.html
index 69eb88ef..4689dfd4 100644
--- a/images.html
+++ b/images.html
@@ -382,7 +382,7 @@ <h3 id="03-ncbi-sra-figure-5">Figure 5</h3>
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.8" class="external-link">sandpaper (0.16.8)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.9" class="external-link">sandpaper (0.16.9)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer>
 </div> <!-- / div.container -->
@@ -405,8 +405,8 @@ <h3 id="03-ncbi-sra-figure-5">Figure 5</h3>
   "url": "https://datacarpentry.github.io/organization-genomics/images.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/images.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-10-15",
-  "datePublished": "2024-10-15"
+  "dateModified": "2024-10-22",
+  "datePublished": "2024-10-22"
 }
 
   </script><script>
diff --git a/index.html b/index.html
index 849dbd21..1a4933fa 100644
--- a/index.html
+++ b/index.html
@@ -381,7 +381,7 @@ <h3 class="callout-title">For Instructors</h3>
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.8" class="external-link">sandpaper (0.16.8)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.9" class="external-link">sandpaper (0.16.9)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -403,8 +403,8 @@ <h3 class="callout-title">For Instructors</h3>
   "url": "https://datacarpentry.github.io/organization-genomics/index.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/index.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-10-15",
-  "datePublished": "2024-10-15"
+  "dateModified": "2024-10-22",
+  "datePublished": "2024-10-22"
 }
 
   </script><script>
diff --git a/instructor-notes.html b/instructor-notes.html
index baaa3363..7a10dcb3 100644
--- a/instructor-notes.html
+++ b/instructor-notes.html
@@ -505,7 +505,7 @@ <h4 id="people-are-not-interactive-or-responsive-on-the-exercises">People are no
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.8" class="external-link">sandpaper (0.16.8)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.9" class="external-link">sandpaper (0.16.9)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer>
 </div> <!-- / div.container -->
@@ -528,8 +528,8 @@ <h4 id="people-are-not-interactive-or-responsive-on-the-exercises">People are no
   "url": "https://datacarpentry.github.io/organization-genomics/instructor-notes.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor-notes.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-10-15",
-  "datePublished": "2024-10-15"
+  "dateModified": "2024-10-22",
+  "datePublished": "2024-10-22"
 }
 
   </script><script>
diff --git a/instructor/01-tidiness.html b/instructor/01-tidiness.html
index c3fe2f79..872b0889 100644
--- a/instructor/01-tidiness.html
+++ b/instructor/01-tidiness.html
@@ -564,7 +564,7 @@ <h3 class="callout-title">Key Points</h3>
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.8" class="external-link">sandpaper (0.16.8)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.9" class="external-link">sandpaper (0.16.9)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -587,7 +587,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/01-tidiness.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-06-14",
-  "datePublished": "2024-10-15"
+  "datePublished": "2024-10-22"
 }
 
   </script><script>
diff --git a/instructor/02-project-planning.html b/instructor/02-project-planning.html
index 4f87cb84..2c54d137 100644
--- a/instructor/02-project-planning.html
+++ b/instructor/02-project-planning.html
@@ -387,7 +387,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>Errors:</p>
 <ul><li>Sequential order of well_position changes</li>
@@ -447,7 +447,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li>Samples are organized by sample_id</li>
 <li>To relate filenames use the sample_id, and do a VLOOKUP on
@@ -578,7 +578,7 @@ <h3 class="callout-title">Key Points</h3>
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.8" class="external-link">sandpaper (0.16.8)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.9" class="external-link">sandpaper (0.16.9)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -601,7 +601,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/02-project-planning.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2024-04-04",
-  "datePublished": "2024-10-15"
+  "datePublished": "2024-10-22"
 }
 
   </script><script>
diff --git a/instructor/03-ncbi-sra.html b/instructor/03-ncbi-sra.html
index 660c57e0..2826b3f4 100644
--- a/instructor/03-ncbi-sra.html
+++ b/instructor/03-ncbi-sra.html
@@ -470,7 +470,7 @@ <h3 class="callout-title">Discussion</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li>Escherichia coli B str. REL606 shown under the “organism” column.
 This is a tricky question because the column labeled “strain” actually
@@ -580,7 +580,7 @@ <h3 class="callout-title">Key Points</h3>
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.8" class="external-link">sandpaper (0.16.8)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.9" class="external-link">sandpaper (0.16.9)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -603,7 +603,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/03-ncbi-sra.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-11-20",
-  "datePublished": "2024-10-15"
+  "datePublished": "2024-10-22"
 }
 
   </script><script>
diff --git a/instructor/404.html b/instructor/404.html
index fb7bc6f4..42353907 100644
--- a/instructor/404.html
+++ b/instructor/404.html
@@ -309,7 +309,7 @@ <h1>Page not found</h1>
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.8" class="external-link">sandpaper (0.16.8)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.9" class="external-link">sandpaper (0.16.9)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -331,8 +331,8 @@ <h1>Page not found</h1>
   "url": "https://datacarpentry.github.io/organization-genomics/instructor/404.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/404.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-10-15",
-  "datePublished": "2024-10-15"
+  "dateModified": "2024-10-22",
+  "datePublished": "2024-10-22"
 }
 
   </script><script>
diff --git a/instructor/CODE_OF_CONDUCT.html b/instructor/CODE_OF_CONDUCT.html
index 8f1222fc..3931d7fe 100644
--- a/instructor/CODE_OF_CONDUCT.html
+++ b/instructor/CODE_OF_CONDUCT.html
@@ -337,7 +337,7 @@ <h1>Contributor Code of Conduct</h1>
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.8" class="external-link">sandpaper (0.16.8)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.9" class="external-link">sandpaper (0.16.9)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -360,7 +360,7 @@ <h1>Contributor Code of Conduct</h1>
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/CODE_OF_CONDUCT.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-10-15"
+  "datePublished": "2024-10-22"
 }
 
   </script><script>
diff --git a/instructor/LICENSE.html b/instructor/LICENSE.html
index e17f0ddb..6e834ced 100644
--- a/instructor/LICENSE.html
+++ b/instructor/LICENSE.html
@@ -385,7 +385,7 @@ <h1>Licenses</h1>
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.8" class="external-link">sandpaper (0.16.8)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.9" class="external-link">sandpaper (0.16.9)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -408,7 +408,7 @@ <h1>Licenses</h1>
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/LICENSE.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-10-15"
+  "datePublished": "2024-10-22"
 }
 
   </script><script>
diff --git a/instructor/aio.html b/instructor/aio.html
index 6689cf99..010bd78f 100644
--- a/instructor/aio.html
+++ b/instructor/aio.html
@@ -677,7 +677,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>Errors:</p>
 <ul>
@@ -751,7 +751,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <ol style="list-style-type: decimal">
 <li>Samples are organized by sample_id</li>
@@ -1046,7 +1046,7 @@ <h3 class="callout-title">Discussion</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <ol style="list-style-type: decimal">
 <li>Escherichia coli B str. REL606 shown under the “organism” column.
@@ -1160,7 +1160,7 @@ <h3 class="callout-title">Key Points</h3>
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.8" class="external-link">sandpaper (0.16.8)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.9" class="external-link">sandpaper (0.16.9)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer>
 </div> <!-- / div.container -->
@@ -1183,8 +1183,8 @@ <h3 class="callout-title">Key Points</h3>
   "url": "https://datacarpentry.github.io/organization-genomics/instructor/aio.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/aio.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-10-15",
-  "datePublished": "2024-10-15"
+  "dateModified": "2024-10-22",
+  "datePublished": "2024-10-22"
 }
 
   </script><script>
diff --git a/instructor/data.html b/instructor/data.html
index 784baa01..b0323067 100644
--- a/instructor/data.html
+++ b/instructor/data.html
@@ -417,7 +417,7 @@ <h2 id="references">References<a class="anchor" aria-label="anchor" href="#refer
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.8" class="external-link">sandpaper (0.16.8)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.9" class="external-link">sandpaper (0.16.9)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -440,7 +440,7 @@ <h2 id="references">References<a class="anchor" aria-label="anchor" href="#refer
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/data.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-10-15"
+  "datePublished": "2024-10-22"
 }
 
   </script><script>
diff --git a/instructor/discuss.html b/instructor/discuss.html
index 9b2a431e..3cfb6d6e 100644
--- a/instructor/discuss.html
+++ b/instructor/discuss.html
@@ -330,7 +330,7 @@ <h1>Discussion</h1>
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.8" class="external-link">sandpaper (0.16.8)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.9" class="external-link">sandpaper (0.16.9)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -353,7 +353,7 @@ <h1>Discussion</h1>
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/discuss.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-10-15"
+  "datePublished": "2024-10-22"
 }
 
   </script><script>
diff --git a/instructor/images.html b/instructor/images.html
index 88684ed2..ec1c2385 100644
--- a/instructor/images.html
+++ b/instructor/images.html
@@ -388,7 +388,7 @@ <h3 id="03-ncbi-sra-figure-5">Figure 5</h3>
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.8" class="external-link">sandpaper (0.16.8)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.9" class="external-link">sandpaper (0.16.9)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer>
 </div> <!-- / div.container -->
@@ -411,8 +411,8 @@ <h3 id="03-ncbi-sra-figure-5">Figure 5</h3>
   "url": "https://datacarpentry.github.io/organization-genomics/instructor/images.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/images.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-10-15",
-  "datePublished": "2024-10-15"
+  "dateModified": "2024-10-22",
+  "datePublished": "2024-10-22"
 }
 
   </script><script>
diff --git a/instructor/index.html b/instructor/index.html
index 1b17065a..885e56bb 100644
--- a/instructor/index.html
+++ b/instructor/index.html
@@ -424,7 +424,7 @@ <h3 class="callout-title">For Instructors</h3>
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.8" class="external-link">sandpaper (0.16.8)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.9" class="external-link">sandpaper (0.16.9)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -446,8 +446,8 @@ <h3 class="callout-title">For Instructors</h3>
   "url": "https://datacarpentry.github.io/organization-genomics/instructor/index.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/index.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-10-15",
-  "datePublished": "2024-10-15"
+  "dateModified": "2024-10-22",
+  "datePublished": "2024-10-22"
 }
 
   </script><script>
diff --git a/instructor/instructor-notes.html b/instructor/instructor-notes.html
index 974a7cac..175463b7 100644
--- a/instructor/instructor-notes.html
+++ b/instructor/instructor-notes.html
@@ -514,7 +514,7 @@ <h4 id="people-are-not-interactive-or-responsive-on-the-exercises">People are no
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.8" class="external-link">sandpaper (0.16.8)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.9" class="external-link">sandpaper (0.16.9)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer>
 </div> <!-- / div.container -->
@@ -537,8 +537,8 @@ <h4 id="people-are-not-interactive-or-responsive-on-the-exercises">People are no
   "url": "https://datacarpentry.github.io/organization-genomics/instructor/instructor-notes.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/instructor-notes.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-10-15",
-  "datePublished": "2024-10-15"
+  "dateModified": "2024-10-22",
+  "datePublished": "2024-10-22"
 }
 
   </script><script>
diff --git a/instructor/key-points.html b/instructor/key-points.html
index fd896bf5..58a08256 100644
--- a/instructor/key-points.html
+++ b/instructor/key-points.html
@@ -373,7 +373,7 @@ <h2 class="accordion-header" id="flush-headingTwelve">
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.8" class="external-link">sandpaper (0.16.8)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.9" class="external-link">sandpaper (0.16.9)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer>
 </div> <!-- / div.container -->
@@ -396,8 +396,8 @@ <h2 class="accordion-header" id="flush-headingTwelve">
   "url": "https://datacarpentry.github.io/organization-genomics/instructor/key-points.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/key-points.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-10-15",
-  "datePublished": "2024-10-15"
+  "dateModified": "2024-10-22",
+  "datePublished": "2024-10-22"
 }
 
   </script><script>
diff --git a/instructor/old-ncbi.html b/instructor/old-ncbi.html
index 1f6412fa..5e9baadb 100644
--- a/instructor/old-ncbi.html
+++ b/instructor/old-ncbi.html
@@ -351,7 +351,7 @@ <h1>Old NCBI</h1>
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.8" class="external-link">sandpaper (0.16.8)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.9" class="external-link">sandpaper (0.16.9)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -374,7 +374,7 @@ <h1>Old NCBI</h1>
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/old-ncbi.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-10-15"
+  "datePublished": "2024-10-22"
 }
 
   </script><script>
diff --git a/instructor/profiles.html b/instructor/profiles.html
index a483f622..1c7be1bb 100644
--- a/instructor/profiles.html
+++ b/instructor/profiles.html
@@ -287,7 +287,7 @@ <h1>Learner Profiles</h1>
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.8" class="external-link">sandpaper (0.16.8)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.9" class="external-link">sandpaper (0.16.9)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -309,8 +309,8 @@ <h1>Learner Profiles</h1>
   "url": "https://datacarpentry.github.io/organization-genomics/instructor/profiles.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/profiles.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-10-15",
-  "datePublished": "2024-10-15"
+  "dateModified": "2024-10-22",
+  "datePublished": "2024-10-22"
 }
 
   </script><script>
diff --git a/instructor/reference.html b/instructor/reference.html
index eceae159..d60716a3 100644
--- a/instructor/reference.html
+++ b/instructor/reference.html
@@ -427,7 +427,7 @@ <h1>Glossary</h1>
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.8" class="external-link">sandpaper (0.16.8)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.9" class="external-link">sandpaper (0.16.9)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -450,7 +450,7 @@ <h1>Glossary</h1>
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/reference.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-10-15"
+  "datePublished": "2024-10-22"
 }
 
   </script><script>
diff --git a/key-points.html b/key-points.html
index c3429379..24d4862e 100644
--- a/key-points.html
+++ b/key-points.html
@@ -367,7 +367,7 @@ <h2 class="accordion-header" id="flush-headingTwelve">
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.8" class="external-link">sandpaper (0.16.8)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.9" class="external-link">sandpaper (0.16.9)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer>
 </div> <!-- / div.container -->
@@ -390,8 +390,8 @@ <h2 class="accordion-header" id="flush-headingTwelve">
   "url": "https://datacarpentry.github.io/organization-genomics/key-points.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/key-points.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-10-15",
-  "datePublished": "2024-10-15"
+  "dateModified": "2024-10-22",
+  "datePublished": "2024-10-22"
 }
 
   </script><script>
diff --git a/old-ncbi.html b/old-ncbi.html
index fccaa9a1..54860a20 100644
--- a/old-ncbi.html
+++ b/old-ncbi.html
@@ -349,7 +349,7 @@ <h1>Old NCBI</h1>
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.8" class="external-link">sandpaper (0.16.8)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.9" class="external-link">sandpaper (0.16.9)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -372,7 +372,7 @@ <h1>Old NCBI</h1>
   "identifier": "https://datacarpentry.github.io/organization-genomics/old-ncbi.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-10-15"
+  "datePublished": "2024-10-22"
 }
 
   </script><script>
diff --git a/pkgdown.yml b/pkgdown.yml
index 3e73094b..37fdca33 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -2,4 +2,4 @@ pandoc: 3.1.11
 pkgdown: 2.1.1
 pkgdown_sha: ~
 articles: {}
-last_built: 2024-10-15T00:25Z
+last_built: 2024-10-22T00:25Z
diff --git a/profiles.html b/profiles.html
index ca23a1af..d6fe1978 100644
--- a/profiles.html
+++ b/profiles.html
@@ -287,7 +287,7 @@ <h1>Learner Profiles</h1>
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.8" class="external-link">sandpaper (0.16.8)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.9" class="external-link">sandpaper (0.16.9)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -309,8 +309,8 @@ <h1>Learner Profiles</h1>
   "url": "https://datacarpentry.github.io/organization-genomics/profiles.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/profiles.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2024-10-15",
-  "datePublished": "2024-10-15"
+  "dateModified": "2024-10-22",
+  "datePublished": "2024-10-22"
 }
 
   </script><script>
diff --git a/reference.html b/reference.html
index 130bf969..c744f7e6 100644
--- a/reference.html
+++ b/reference.html
@@ -425,7 +425,7 @@ <h1>Glossary</h1>
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
 
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.8" class="external-link">sandpaper (0.16.8)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.9" class="external-link">sandpaper (0.16.9)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.6" class="external-link">pegboard (0.7.6)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.4" class="external-link">varnish (1.0.4)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -448,7 +448,7 @@ <h1>Glossary</h1>
   "identifier": "https://datacarpentry.github.io/organization-genomics/reference.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-02",
-  "datePublished": "2024-10-15"
+  "datePublished": "2024-10-22"
 }
 
   </script><script>