From 13a8cb54885631cddbe411342f2f4391c182d475 Mon Sep 17 00:00:00 2001
From: GitHub Actions <actions@github.com>
Date: Tue, 4 Feb 2025 18:30:43 +0000
Subject: [PATCH] site deploy

Auto-generated via `{sandpaper}`
Source  : 702c15748f27b306f4ea4bb77c7054caba6a0b20
Branch  : md-outputs
Author  : GitHub Actions <actions@github.com>
Time    : 2025-02-04 18:30:31 +0000
Message : markdown source builds

Auto-generated via `{sandpaper}`
Source  : 0cf9855eed2437554f8a2301132ffd20f399713f
Branch  : main
Author  : maneesha <829690+maneesha@users.noreply.github.com>
Time    : 2025-02-04 18:29:38 +0000
Message : Merge pull request #168 from datacarpentry/rm-ci-fsp

 rm reference to CI FSP
---
 02-project-planning.html            | 4 ++--
 03-ncbi-sra.html                    | 2 +-
 LICENSE.html                        | 6 +++---
 aio.html                            | 6 +++---
 instructor/02-project-planning.html | 4 ++--
 instructor/03-ncbi-sra.html         | 2 +-
 instructor/LICENSE.html             | 6 +++---
 instructor/aio.html                 | 6 +++---
 md5sum.txt                          | 2 +-
 pkgdown.yml                         | 2 +-
 10 files changed, 20 insertions(+), 20 deletions(-)

diff --git a/02-project-planning.html b/02-project-planning.html
index 1838d4cd..80743969 100644
--- a/02-project-planning.html
+++ b/02-project-planning.html
@@ -385,7 +385,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>Errors:</p>
 <ul><li>Sequential order of well_position changes</li>
@@ -445,7 +445,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li>Samples are organized by sample_id</li>
 <li>To relate filenames use the sample_id, and do a VLOOKUP on
diff --git a/03-ncbi-sra.html b/03-ncbi-sra.html
index b55c7761..316f53ac 100644
--- a/03-ncbi-sra.html
+++ b/03-ncbi-sra.html
@@ -468,7 +468,7 @@ <h3 class="callout-title">Discussion</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li>Escherichia coli B str. REL606 shown under the “organism” column.
 This is a tricky question because the column labeled “strain” actually
diff --git a/LICENSE.html b/LICENSE.html
index abb70e96..9a601431 100644
--- a/LICENSE.html
+++ b/LICENSE.html
@@ -278,7 +278,7 @@ <h2 class="accordion-header" id="flush-headingTwelve">
       </div>
       <hr></nav><main id="main-content" class="main-content"><div class="container lesson-content">
         <h1>Licenses</h1>
-        <p>Last updated on 2023-05-02 |
+        <p>Last updated on 2025-02-04 |
 
         <a href="https://github.com/datacarpentry/organization-genomics/edit/main/LICENSE.md" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
 
@@ -346,7 +346,7 @@ <h1>Licenses</h1>
 </section><section><h2 class="section-heading" id="trademark">Trademark<a class="anchor" aria-label="anchor" href="#trademark"></a></h2>
 <hr class="half-width"><p>“The Carpentries”, “Software Carpentry”, “Data Carpentry”, and
 “Library Carpentry” and their respective logos are registered trademarks
-of <a href="https://communityin.org/" class="external-link">Community Initiatives</a>.</p>
+of <a href="https://carpentries.org" class="external-link">The Carpentries, Inc.</a>.</p>
 </section></div> <!-- / div.lesson-content -->
     </main><!-- / main#main-content.main-content --><nav class="bottom-pagination mx-md-4" aria-label="Previous and Next Chapter"><div class="d-block d-sm-block d-md-none">
         <a class="chapter-link" href="index.html"><i aria-hidden="true" class="small-arrow" data-feather="arrow-left"></i>Previous</a>
@@ -405,7 +405,7 @@ <h1>Licenses</h1>
   "url": "https://datacarpentry.github.io/organization-genomics/LICENSE.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/LICENSE.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2023-05-02",
+  "dateModified": "2025-02-04",
   "datePublished": "2025-02-04"
 }
 
diff --git a/aio.html b/aio.html
index 9351cf0f..8d8f120a 100644
--- a/aio.html
+++ b/aio.html
@@ -669,7 +669,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>Errors:</p>
 <ul>
@@ -743,7 +743,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <ol style="list-style-type: decimal">
 <li>Samples are organized by sample_id</li>
@@ -1037,7 +1037,7 @@ <h3 class="callout-title">Discussion</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <ol style="list-style-type: decimal">
 <li>Escherichia coli B str. REL606 shown under the “organism” column.
diff --git a/instructor/02-project-planning.html b/instructor/02-project-planning.html
index 61df54ac..31e54ce5 100644
--- a/instructor/02-project-planning.html
+++ b/instructor/02-project-planning.html
@@ -387,7 +387,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>Errors:</p>
 <ul><li>Sequential order of well_position changes</li>
@@ -447,7 +447,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li>Samples are organized by sample_id</li>
 <li>To relate filenames use the sample_id, and do a VLOOKUP on
diff --git a/instructor/03-ncbi-sra.html b/instructor/03-ncbi-sra.html
index d4ee415e..49acc170 100644
--- a/instructor/03-ncbi-sra.html
+++ b/instructor/03-ncbi-sra.html
@@ -470,7 +470,7 @@ <h3 class="callout-title">Discussion</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li>Escherichia coli B str. REL606 shown under the “organism” column.
 This is a tricky question because the column labeled “strain” actually
diff --git a/instructor/LICENSE.html b/instructor/LICENSE.html
index 8f68d588..7f134ed5 100644
--- a/instructor/LICENSE.html
+++ b/instructor/LICENSE.html
@@ -278,7 +278,7 @@ <h2 class="accordion-header" id="flush-headingTwelve">
       </div>
       <hr></nav><main id="main-content" class="main-content"><div class="container lesson-content">
         <h1>Licenses</h1>
-        <p>Last updated on 2023-05-02 |
+        <p>Last updated on 2025-02-04 |
 
         <a href="https://github.com/datacarpentry/organization-genomics/edit/main/LICENSE.md" class="external-link">Edit this page <i aria-hidden="true" data-feather="edit"></i></a></p>
 
@@ -348,7 +348,7 @@ <h1>Licenses</h1>
 </section><section><h2 class="section-heading" id="trademark">Trademark<a class="anchor" aria-label="anchor" href="#trademark"></a></h2>
 <hr class="half-width"><p>“The Carpentries”, “Software Carpentry”, “Data Carpentry”, and
 “Library Carpentry” and their respective logos are registered trademarks
-of <a href="https://communityin.org/" class="external-link">Community Initiatives</a>.</p>
+of <a href="https://carpentries.org" class="external-link">The Carpentries, Inc.</a>.</p>
 </section></div> <!-- / div.lesson-content -->
     </main><!-- / main#main-content.main-content --><nav class="bottom-pagination mx-md-4" aria-label="Previous and Next Chapter"><div class="d-block d-sm-block d-md-none">
         <a class="chapter-link" href="../instructor/index.html"><i aria-hidden="true" class="small-arrow" data-feather="arrow-left"></i>Previous</a>
@@ -407,7 +407,7 @@ <h1>Licenses</h1>
   "url": "https://datacarpentry.github.io/organization-genomics/instructor/LICENSE.html",
   "identifier": "https://datacarpentry.github.io/organization-genomics/instructor/LICENSE.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2023-05-02",
+  "dateModified": "2025-02-04",
   "datePublished": "2025-02-04"
 }
 
diff --git a/instructor/aio.html b/instructor/aio.html
index e5886d1d..57aaffcf 100644
--- a/instructor/aio.html
+++ b/instructor/aio.html
@@ -677,7 +677,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>Errors:</p>
 <ul>
@@ -751,7 +751,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <ol style="list-style-type: decimal">
 <li>Samples are organized by sample_id</li>
@@ -1046,7 +1046,7 @@ <h3 class="callout-title">Discussion</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <ol style="list-style-type: decimal">
 <li>Escherichia coli B str. REL606 shown under the “organism” column.
diff --git a/md5sum.txt b/md5sum.txt
index 60fe6b09..03609d06 100644
--- a/md5sum.txt
+++ b/md5sum.txt
@@ -1,6 +1,6 @@
 "file" "checksum" "built" "date"
 "CODE_OF_CONDUCT.md" "c93c83c630db2fe2462240bf72552548" "site/built/CODE_OF_CONDUCT.md" "2023-05-02"
-"LICENSE.md" "b24ebbb41b14ca25cf6b8216dda83e5f" "site/built/LICENSE.md" "2023-05-02"
+"LICENSE.md" "e94126b93e27bae014999c2e84ee93f8" "site/built/LICENSE.md" "2025-02-04"
 "config.yaml" "301fc4a15182dcbcdaf4b39112259eac" "site/built/config.yaml" "2023-05-02"
 "index.md" "33e8d0e0bc8849f755a4bc0f598b6a7a" "site/built/index.md" "2023-11-20"
 "episodes/01-tidiness.md" "4df50eab6edeb9e266d3f427fc409c8b" "site/built/01-tidiness.md" "2023-06-14"
diff --git a/pkgdown.yml b/pkgdown.yml
index acccaff2..9432b801 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -2,4 +2,4 @@ pandoc: 3.1.11
 pkgdown: 2.1.1
 pkgdown_sha: ~
 articles: {}
-last_built: 2025-02-04T00:24Z
+last_built: 2025-02-04T18:30Z