docker-compose.yaml

# .env file in the compose directory is loaded automatically and the env vars defined there are available
# for use in this file, but are not passed to the container runtimes. In order to pass these to a specific
# container, 'env_file' section needs to be used: https://docs.docker.com/compose/environment-variables/#the-env-file
version: '3'
services:
  fastapi-api:
    container_name: fastAPI-bedbase
    env_file: .env
    build:
      dockerfile: dev.Dockerfile
      context: .
    ports:
      - 8000:8000
    volumes:
      - ${BEDBASE_DATA_PATH_HOST}:${BEDBASE_DATA_PATH}
    depends_on:
      - ${DB_HOST_URL}
    command: ["./wait-for-it/wait-for-it.sh", "${DB_HOST_URL}:${POSTGRES_PORT}", "--timeout=60" ,"--", "bedhost", "serve", "-d", "-c", "${BEDBASE_DATA_PATH}/bedbase/tutorial_files/bedbase_configuration_compose.yaml"]
  postgres-db:
    container_name: postgreSQL-bedbase
    env_file: .env
    image: postgres # version of the image (and therefore software) has to match the one used to load the data in
    restart: always
    ports:
      - ${POSTGRES_PORT}:${POSTGRES_PORT}
    volumes:
      - postgres-data:/var/lib/postgresql/data
volumes:
  postgres-data: #/var/lib/docker/volumes/postgres-data/_data
    external: true