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Welcome to the MetaSBT wiki!

MetaSBT is a scalable framework for automatically indexing microbial genomes and accurately characterizing metagenome-assembled genomes with Sequence Bloom Trees.

This is the content of the wiki:

• Getting started
  • Installing MetaSBT
  • Dependencies
• Available features
  • db: list and retrieve public databases
  • index: create a baseline with reference genomes
  • kraken: build a custom Kraken database
  • pack: pack a database into a compressed tarball
  • profile: characterize genomes and metagenome-assembled genomes
  • sketch: sketch genomes into bloom filters
  • summarize: summarize the content of a database
  • test: run unit tests
  • unpack: install a database
  • update: update a database with new genomes
• Retrieving genomes from NCBI GenBank