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Remi-GauRemi-Gau
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Merge pull request #48 from cpp-lln-lab/dev
[REL] v0.3.0
2 parents 7870fd6 + 7b78ac8 commit 038adce

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‎.all-contributorsrc

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{
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"projectName": "CPP_ROI",
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"projectOwner": "cpp-lln-lab",
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"repoType": "github",
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"repoHost": "https://github.com",
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"files": [
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"README.md"
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],
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"imageSize": 100,
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"commit": true,
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"commitConvention": "none",
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"contributors": [
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{
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"login": "marcobarilari",
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"name": "Marco Barilari",
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"contributions": [
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"code",
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"doc",
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"ideas"
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],
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"profile": "https://github.com/marcobarilari",
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"avatar_url": [
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"https://avatars.githubusercontent.com/u/38101692?v=4"
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]
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},
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{
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"login": "Remi-Gau",
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"name": "Remi Gau",
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"contributions": [
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"code",
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"doc",
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"infra",
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"design",
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"review",
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"bug",
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"test"
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],
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"profile": "https://github.com/Remi-Gau",
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"avatar_url": [
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"https://avatars.githubusercontent.com/u/6961185?v=4"
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]
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},
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{
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"login": "JeanneCaronGuyon ",
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"name": "Jeanne Caron-Guyon ",
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"avatar_url": "https://avatars.githubusercontent.com/u/8718798?v=4",
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"profile": "https://github.com/JeanneCaronGuyon",
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"contributions": [
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"ideas",
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"userTesting"
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]
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},
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{
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"login": "iqrashahzad14",
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"name": "Iqra Shahzad",
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"avatar_url": "https://avatars.githubusercontent.com/u/75671348?v=4",
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"profile": "https://github.com/iqrashahzad14",
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"contributions": [
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"userTesting"
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]
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},
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{
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"login": "fedefalag",
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"name": "Federica Falagiarda",
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"avatar_url": "https://avatars2.githubusercontent.com/u/50373329?v=4",
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"profile": "https://github.com/fedefalag",
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"contributions": [
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"bug",
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"userTesting"
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]
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},
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{
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"login": "CerenB",
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"name": "Ceren Battal",
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"contributions": [
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"code",
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"review",
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"userTesting"
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],
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"profile": "https://github.com/CerenB",
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"avatar_url": [
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"https://avatars.githubusercontent.com/u/10451654?v=4"
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]
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}
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],
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"contributorsPerLine": 7
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}

‎.github/workflows/miss_hit.yml

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name: miss_hit
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on:
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push:
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branches:
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- main
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- dev
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paths:
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- '**.m'
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pull_request:
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branches: ['*']
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paths:
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- '**.m'
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jobs:
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miss_hit:
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runs-on: ubuntu-latest
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strategy:
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matrix:
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command: ["mh_style", "mh_metric --ci && mh_lint"]
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fail-fast: true # cancel all jobs if one fails
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steps:
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- uses: actions/checkout@v3
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with:
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submodules: true
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fetch-depth: 1
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- name: Set up Python
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uses: actions/setup-python@v3
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with:
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python-version: 3.9
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- name: Install dependencies
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run: |
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python -m pip install --upgrade pip setuptools
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pip3 install -r requirements.txt
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- name: ${{ matrix.command }}
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run: |
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${{ matrix.command }}

‎.github/workflows/miss_hit_quality.yml

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‎.github/workflows/miss_hit_style.yml

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‎.github/workflows/run_tests_matlab.yml

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branches:
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- dev
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- main
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- master
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paths:
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- '**.m'
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- '.github/workflows/*.m'
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pull_request:
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branches: ['*']
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paths:
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- '**.m'
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- '.github/workflows/*.m'
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schedule:
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- cron: "1 1 1 * *"
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git clone https://github.com/MOcov/MOcov.git --depth 1
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- name: Add bids-matlab
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run: |
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git clone https://github.com/bids-standard/bids-matlab.git --depth 1
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run: make install_dev
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- name: Run commands
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uses: matlab-actions/[email protected]

‎.github/workflows/update-contributors.yml

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name: allcontributors-auto-detect
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on:
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schedule:
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# Run nightly 1am
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- cron: 0 1 * * *
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# You can also have it check for changes on each push to master
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push:
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branches:
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- main
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- dev
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jobs:
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Update:
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name: Generate
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runs-on: ubuntu-latest
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steps:
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- name: Checkout Repository
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uses: actions/checkout@v2
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- name: Tributors Update
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# Important! Update to release https://github.com/con/tributors
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uses: con/tributors@master
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env:
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GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
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with:
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# Single text list (space separated) of parsers, leave unset to auto-detect
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parsers: unset
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# INFO, DEBUG, ERROR, WARNING, etc.
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log_level: DEBUG
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# If files already exist and an init is done, force overwrite
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force: true
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# the minimum number of contributions required to add a user
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threshold: 1
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- name: Checkout New Branch
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env:
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GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
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BRANCH_AGAINST: "main"
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run: |
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printf "GitHub Actor: ${GITHUB_ACTOR}\n"
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export BRANCH_FROM="contributors/update-$(date '+%Y-%m-%d')"
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git remote set-url origin "https://x-access-token:${GITHUB_TOKEN}@github.com/${GITHUB_REPOSITORY}.git"
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BRANCH_EXISTS=$(git ls-remote --heads origin ${BRANCH_FROM})
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if [[ -z ${BRANCH_EXISTS} ]]; then
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printf "Branch does not exist in remote.\n"
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else
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printf "Branch already exists in remote.\n"
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exit 1
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fi
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git branch
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git checkout -b "${BRANCH_FROM}" || git checkout "${BRANCH_FROM}"
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git branch
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git config --global user.name "github-actions"
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git config --global user.email "[email protected]"
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git status
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# Make sure to add new files or path/*
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git add .tributors
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git add README.md
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git add .all-contributorsrc
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if git diff-index --quiet HEAD --; then
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export OPEN_PULL_REQUEST=0
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printf "No changes\n"
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else
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export OPEN_PULL_REQUEST=1
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printf "Changes\n"
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git commit -a -m "Automated deployment to update contributors $(date '+%Y-%m-%d')"
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git push origin "${BRANCH_FROM}"
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fi
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echo "::set-env name=OPEN_PULL_REQUEST::${OPEN_PULL_REQUEST}"
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echo "::set-env name=PULL_REQUEST_FROM_BRANCH::${BRANCH_FROM}"
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echo "::set-env name=PULL_REQUEST_TITLE::[tributors] ${BRANCH_FROM}"
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echo "::set-env name=PULL_REQUEST_BODY::Updating tributors automated pull request."
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- name: Open Pull Request
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uses: vsoch/[email protected]
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if: ${{ env.OPEN_PULL_REQUEST == '1' }}
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env:
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GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
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PULL_REQUEST_BRANCH: "master"

‎.github/workflows/validate_cff.yml

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name: validate CITATION.cff
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on:
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push:
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branches: ['*']
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paths:
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- 'CITATION.cff'
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- '.github/workflows/validate_cff.yml'
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pull_request:
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branches: ['*']
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paths:
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- 'CITATION.cff'
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- '.github/workflows/validate_cff.yml'
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jobs:
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validate_cff:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v3
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with:
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fetch-depth: 1
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- name: Set up Python
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uses: actions/setup-python@v3
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with:
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python-version: 3.9
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- name: Install dependencies
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run: |
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python -m pip install --upgrade pip setuptools
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pip3 install cffconvert
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- name: Validate CITATION.cff
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run: cffconvert --validate

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