From ffb5b8bdc7e845365a9c45a75dd03fa7bbe092af Mon Sep 17 00:00:00 2001
From: suzm10 <suzanmanasreh@gmail.com>
Date: Fri, 21 Jun 2024 21:10:09 -0400
Subject: [PATCH] see runner

---
 .github/workflows/phoenix.yml | 35 +++++++++++++++++++++++++++++++++++
 .gitignore                    |  3 ++-
 examples/case/initcond.F90    |  2 +-
 install/install.sh            |  9 ++++++---
 4 files changed, 44 insertions(+), 5 deletions(-)
 create mode 100644 .github/workflows/phoenix.yml

diff --git a/.github/workflows/phoenix.yml b/.github/workflows/phoenix.yml
new file mode 100644
index 0000000..3f2a16d
--- /dev/null
+++ b/.github/workflows/phoenix.yml
@@ -0,0 +1,35 @@
+name: 'Test on Phoenix'
+
+on:
+    pull_request:
+    workflow_dispatch:
+
+jobs:
+  self:
+    name: Phoenix Runner
+    runs-on:
+        labels: gt
+    if: github.repository == 'Comp-Physics/RBC3D'
+    continue-on-error: true
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+      
+      # use mkl option
+      - name: Build Packages
+        run: |
+            ml gcc mvapich2 mkl python/3.9.12-rkxvr6 netcdf-fortran fftw cmake
+            ./rbc.sh install
+
+      # will stop on any errors
+      - name: Compile Cases
+        run: |
+            ml gcc mvapich2 mkl python/3.9.12-rkxvr6 netcdf-fortran fftw cmake
+            set -e -x
+            export PETSC_DIR=`pwd`/packages/petsc-3.19.6
+            export PETSC_ARCH=arch-linux-c-opt
+            mkdir build
+            cd build
+            cmake ..
+            make
+            echo "/common and all cases in /examples compiled successfully!"
diff --git a/.gitignore b/.gitignore
index c31de14..9441771 100644
--- a/.gitignore
+++ b/.gitignore
@@ -14,4 +14,5 @@ libcommon.a
 field
 packages
 traction
-build
\ No newline at end of file
+build
+spherocytes
diff --git a/examples/case/initcond.F90 b/examples/case/initcond.F90
index 82ead4c..e235cec 100644
--- a/examples/case/initcond.F90
+++ b/examples/case/initcond.F90
@@ -89,7 +89,7 @@ program InitCond
     xc(1:2) = 0.
     xc(3) = lengspacing*(iz - 0.5)
     print *, 'Xc', iz, xc
-
+    
     rbc => rbcs(iz)
     rbc%celltype = 1
     call Rbc_Create(rbc, nlat0, dealias)
diff --git a/install/install.sh b/install/install.sh
index 6be184d..b27d261 100644
--- a/install/install.sh
+++ b/install/install.sh
@@ -12,9 +12,7 @@ tar -xf petsc-3.19.tar.gz
 cd petsc-3.19.6
 
 # if these configure options don't work, it's probably a path issue
-./configure --with-cc=mpicc \
-    --with-cxx=mpicxx \
-    --with-fc=mpif90 \
+./configure --with-mpi-dir=$MPI_ROOT \
     --with-fortran-datatypes \
     --with-debugging=0 \
     --COPTFLAGS=-g -O3 -march=native -mtune=native \
@@ -24,6 +22,11 @@ cd petsc-3.19.6
     --with-mpiexec=srun \
     --with-x11=0 --with-x=0 --with-windows-graphics=0
 
+if (($?)); then
+    error "PETSc configure failed"
+    exit 1
+fi
+
 make PETSC_DIR=`pwd` PETSC_ARCH=arch-linux-c-opt all
 make PETSC_DIR=`pwd` PETSC_ARCH=arch-linux-c-opt check