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BrainIsDeadBrainIsDead
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Merge pull request #16 from cmu-delphi/ci-tests
The changes made in this commit include:
2 parents ec55a42 + 532eaff commit e8d46ff

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‎.github/workflows/tests.yaml

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name: Django Tests
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on: [pull_request, push]
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jobs:
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test:
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runs-on: ubuntu-latest
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env:
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MYSQL_ROOT_PASSWORD: mysql_root_password
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MYSQL_DATABASE: mysql_database
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MYSQL_USER: mysql_user
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MYSQL_PASSWORD: mysql_password
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MYSQL_HOST: 127.0.0.1
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MYSQL_PORT: 3306
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services:
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mysql:
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image: mysql:latest
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env:
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MYSQL_ROOT_PASSWORD: ${{ env.MYSQL_ROOT_PASSWORD }}
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MYSQL_DATABASE: ${{ env.MYSQL_DATABASE }}
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MYSQL_USER: ${{ env.MYSQL_USER }}
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MYSQL_PASSWORD: ${{ env.MYSQL_PASSWORD }}
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ports:
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- 3306:3306
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options: >-
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--health-cmd="mysqladmin ping"
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--health-interval=10s
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--health-timeout=5s
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--health-retries=3
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steps:
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- name: Checkout code
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uses: actions/checkout@v2
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- name: Set up Python
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uses: actions/setup-python@v2
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with:
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python-version: "3.10"
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- name: Install dependencies
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run: |
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python3 -m pip install --upgrade pip
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sudo apt-get update -y
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sudo apt-get install mysql-client -y
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sudo apt-get install graphviz graphviz-dev -y
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pip install pipenv
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pipenv requirements > requirements.txt
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pip install -r requirements.txt
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- name: Make migrations
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env:
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MYSQL_ROOT_PASSWORD: ${{ env.MYSQL_ROOT_PASSWORD }}
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MYSQL_DATABASE: ${{ env.MYSQL_DATABASE }}
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MYSQL_USER: ${{ env.MYSQL_USER }}
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MYSQL_PASSWORD: ${{ env.MYSQL_PASSWORD }}
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MYSQL_HOST: 127.0.0.1
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MYSQL_PORT: ${{ env.MYSQL_PORT }}
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run: |
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mysql -u root -p"${{ env.MYSQL_ROOT_PASSWORD }}" -e "GRANT ALL PRIVILEGES ON *.* TO '${{ env.MYSQL_USER }}'@'%';"
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python3 ./src/manage.py migrate
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- name: Run linters
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run: |
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pip install flake8
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flake8 .
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- name: Run tests
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env:
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MYSQL_ROOT_PASSWORD: ${{ env.MYSQL_ROOT_PASSWORD }}
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MYSQL_DATABASE: ${{ env.MYSQL_DATABASE }}
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MYSQL_USER: ${{ env.MYSQL_USER }}
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MYSQL_PASSWORD: ${{ env.MYSQL_PASSWORD }}
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MYSQL_HOST: ${{ env.MYSQL_HOST }}
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MYSQL_PORT: ${{ env.MYSQL_PORT }}
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run: |
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python3 ./src/manage.py test

‎Pipfile.lock

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‎docker-compose.yaml

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python /usr/src/signal_documentation/src/manage.py loaddata ./fixtures/pathogens.json &&
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python /usr/src/signal_documentation/src/manage.py loaddata ./fixtures/signal_types.json &&
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python /usr/src/signal_documentation/src/manage.py loaddata ./fixtures/signal_categories.json &&
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python /usr/src/signal_documentation/src/manage.py tests &&
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python /usr/src/signal_documentation/src/manage.py runserver 0.0.0.0:8000"
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volumes:
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- .:/usr/src/signal_documentation

‎src/__init__.py

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‎src/fixtures/available_geography.json

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"model": "signals.Geography",
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"pk": 1,
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"fields": {
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"name": "county"
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"name": "county",
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"created": "2023-08-09T19:23:22.597131",
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"modified": "2023-08-09T19:23:22.597131"
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}
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},
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{
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"model": "signals.Geography",
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"pk": 2,
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"fields": {
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"name": "hhs"
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"name": "hhs",
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"created": "2023-08-09T19:23:22.597131",
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"modified": "2023-08-09T19:23:22.597131"
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}
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},
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{
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"model": "signals.Geography",
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"pk": 3,
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"fields": {
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"name": "hrr"
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"name": "hrr",
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"created": "2023-08-09T19:23:22.597131",
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"modified": "2023-08-09T19:23:22.597131"
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}
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},
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{
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"model": "signals.Geography",
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"pk": 4,
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"fields": {
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"name": "msa"
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"name": "msa",
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"created": "2023-08-09T19:23:22.597131",
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"modified": "2023-08-09T19:23:22.597131"
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}
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},
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{
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"model": "signals.Geography",
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"pk": 5,
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"fields": {
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"name": "nation"
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"name": "nation",
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"created": "2023-08-09T19:23:22.597131",
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"modified": "2023-08-09T19:23:22.597131"
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}
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},
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{
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"model": "signals.Geography",
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"pk": 6,
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"fields": {
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"name": "state"
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"name": "state",
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"created": "2023-08-09T19:23:22.597131",
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"modified": "2023-08-09T19:23:22.597131"
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}
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},
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{
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"model": "signals.Geography",
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"pk": 7,
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"fields": {
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"name": "dma"
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"name": "dma",
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"created": "2023-08-09T19:23:22.597131",
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"modified": "2023-08-09T19:23:22.597131"
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}
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}
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]

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