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It would be helpful not to define the same data twice.
For instance: if my project use fixed hashes, these hashes should be stored in both package.json (to let developers who won't contribute to dependencies use simple npm install) and in mgit.json (for developers who will contribute to dependencies to have proper versions by default).
I understand that there are cases where two separate configurations need to be defined, but for some cases, one is better. My proposal is that if mgit.json is not defined then mgit use package.json.