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msmbayes()now supports semi-Markov models with phase-type approximations to Weibull and Gamma sojourn distributions. -
obstypeanddeathexactsupported for exact transition times, as inmsm. -
Censored states supported through
censor_states. -
Misclassification models with fixed misclassification probabilities now supported.
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Bayesian computation now uses
rstaninstead ofcmdstanr.cmdstanris now only used for Pathfinder, and is no longer a dependency. -
Functions
msmbayes_prior_sample()andmsmbayes_priorpred_sample()to simulate from prior and prior predictive distributions. -
Data summary function,
statetable(), similar to itsmsmcounterpart. -
New output functions, including
soj_prob()to return the CDF of the fitted sojourn distribution at arbitrary points, andpnext()to return the probability of the next state. -
summary()has an improved interface for selecting model parameters.
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Friendlier interface for specifying prior distributions.
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Prior distributions now summarised in
summary.msmbayes()output. -
New function
msmhist()for illustrating multi-state data over time. -
New function
standardise_to()for computing outputs standardised over the distribution of a given population.
- First public release.