kappa_mutations_full.yaml

variant:
  voc: 'VUI-21APR-01'
  who: 'kappa'
  pheuid: 'habitable-pasty'
  short: 'ka'
  pangolin: 'B.1.617.1'
  nextstrain: '21B'
source:
  - doi:10.1101/2021.04.23.441101
  - https://www.gov.uk/government/publications/investigation-of-novel-sars-cov-2-variant-variant-of-concern-20201201#attachment_5216392
  - https://github.com/cov-lineages/pango-designation/issues/38
  - https://www.telegraphindia.com/india/covid-double-mutation-variant-fuels-fears/cid/1809715
threshold: 5
mut:
  210: 'G>T'
  241: 'C>T'
  3037: 'C>T'
  3457: 'C>T' # ORF1ab:syn nsp3
  4965: 'C>T' # ORF1ab:nsp3:T749I
  11201: 'A>G' # ORF1ab:nsp6:T77A
  14408: 'C>T'
  17523: 'G>T' # ORF1ab:nsp13:M429I
  20396: 'A>G' # ORF1ab:nsp15:K259R
  21895: 'T>C' # syn
  22022: 'G>A' # S:E154K
  22917: 'T>G' # surface glycoprotein:L452R
  23012: 'G>C' # surface glycoprotein:E484Q
  23403: 'A>G'
  23604: 'C>G' # surface glycoprotein:P681R
  24775: 'A>T'
  25469: 'C>T' # ORF3a protein:S26L
  27638: 'T>C' # ORF7a protein:V82A
  28881: 'G>T' # nucleocapsid phosphoprotein:R203M
  29402: 'G>T'
  29742: 'G>T'