Tests

[codex] align provider API endpoint contracts #394

	name: Tests

	on:
	push:
	branches: [main]
	paths:
	- 'python/**'
	- 'R/R/**'
	- 'R/tests/**'
	- '.github/workflows/tests.yml'
	pull_request:
	branches: [main]
	paths:
	- 'python/**'
	- 'R/R/**'
	- 'R/tests/**'
	workflow_dispatch:

	jobs:
	python-test:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v6

	- name: Set up Python 3.11
	uses: actions/setup-python@v6
	with:
	python-version: '3.11'
	cache: 'pip'

	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	python -m pip install pytest pytest-cov ruff
	cd python
	pip install -e .[dev]

	- name: Lint
	run: \|
	cd python
	ruff check mllmcelltype tests

	- name: Test
	run: \|
	cd python
	pytest --cov=mllmcelltype tests/

	r-test:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v6

	- name: Set up R
	uses: r-lib/actions/setup-r@v2
	with:
	r-version: 'release'
	use-public-rspm: true

	- name: Install R dependencies
	uses: r-lib/actions/setup-r-dependencies@v2
	with:
	working-directory: R
	extra-packages: any::devtools
	needs: tests

	- name: Test R package
	run: \|
	cd R
	Rscript -e 'devtools::test()'

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