diff --git a/docs/News.md b/docs/News.md index 815069e1e0e..d25e5f89724 100644 --- a/docs/News.md +++ b/docs/News.md @@ -1,19 +1,25 @@ +# What's New + +_[See the complete news archive](https://www.cbioportal.org/news)_ + +--- + ## November 15, 2025 * **Data Improvement**: The default transcripts for each gene were updated to align better with OncoKB, prioritizing clinically relevant and MANE transcripts ([Morales et al. 2022](https://www.nature.com/articles/s41586-022-04558-8)). Also Ensembl's subversions are now included for each transcript. - | Gene | Old transcript | New transcript | - |------|---------------|----------------| - | **ATXN7** | ENST00000295900 | ENST00000398590.3 | - | **CCNQ (FAM58A)** | ENST00000576892 | ENST00000406277.2 | - | **CDKN2A** | ENST00000304494 | ENST00000579755.1 | - | **CRLF2** | ENST00000381566 | ENST00000400841.2 | - | **GAB1** | ENST00000262994 | ENST00000262995.4 | - | **KBTBD4** | ENST00000395288 | ENST00000430070.2 | - | **MUTYH** | ENST00000372115 | ENST00000450313.1 | - | **NADK** | ENST00000341426 | ENST00000378625.1 | - | **PAX8** | ENST00000263334 | ENST00000429538.3 | - | **PGBD5** | ENST00000525115 | ENST00000391860.1 | - | **RBM10** | ENST00000329236 | ENST00000377604.3 | +| Gene | Old transcript | New transcript | +|------|---------------|----------------| +| **ATXN7** | ENST00000295900 | ENST00000398590.3 | +| **CCNQ (FAM58A)** | ENST00000576892 | ENST00000406277.2 | +| **CDKN2A** | ENST00000304494 | ENST00000579755.1 | +| **CRLF2** | ENST00000381566 | ENST00000400841.2 | +| **GAB1** | ENST00000262994 | ENST00000262995.4 | +| **KBTBD4** | ENST00000395288 | ENST00000430070.2 | +| **MUTYH** | ENST00000372115 | ENST00000450313.1 | +| **NADK** | ENST00000341426 | ENST00000378625.1 | +| **PAX8** | ENST00000263334 | ENST00000429538.3 | +| **PGBD5** | ENST00000525115 | ENST00000391860.1 | +| **RBM10** | ENST00000329236 | ENST00000377604.3 | ## November 7, 2025 diff --git a/src/main/java/org/cbioportal/legacy/service/FrontendPropertiesServiceImpl.java b/src/main/java/org/cbioportal/legacy/service/FrontendPropertiesServiceImpl.java index 73d390cc773..6651882b4f1 100644 --- a/src/main/java/org/cbioportal/legacy/service/FrontendPropertiesServiceImpl.java +++ b/src/main/java/org/cbioportal/legacy/service/FrontendPropertiesServiceImpl.java @@ -108,6 +108,7 @@ public enum FrontendProperty { skin_right_nav_show_testimonials("skin.right_nav.show_testimonials", null), skin_right_nav_show_whats_new("skin.right_nav.show_whats_new", null), skin_right_nav_show_twitter("skin.right_nav.show_twitter", null), + skin_right_nav_show_bluesky("skin.right_nav.show_bluesky", null), skin_right_nav_whats_new_blurb("skin.right_nav.whats_new_blurb", null), skin_show_about_tab("skin.show_about_tab", null), skin_show_data_tab("skin.show_data_tab", null), diff --git a/src/main/resources/application.properties.EXAMPLE b/src/main/resources/application.properties.EXAMPLE index 4ea6d74e6e0..41556bcb91b 100644 --- a/src/main/resources/application.properties.EXAMPLE +++ b/src/main/resources/application.properties.EXAMPLE @@ -67,7 +67,7 @@ skin.show_about_tab=true # skin.show_donate_button=true # settings controlling the whats new blurb -skin.right_nav.whats_new_blurb=
• New data and features released
• New tools released
• New data and features released
• New tools released
Please adhere to the TCGA publication guidelines when using TCGA data in your publications.
Please cite Gao et al. Sci. Signal. 2013 & Cerami et al. Cancer Discov. 2012 when publishing results based on cBioPortal.
@@ -92,6 +92,7 @@ skin.right_nav.show_examples=true skin.right_nav.show_testimonials=true skin.right_nav.show_whats_new=true #skin.right_nav.show_twitter=false +#skin.right_nav.show_bluesky=false # settings controlling what to show in the right navigation bar skin.study_view.link_text=To build your own case set, try out our enhanced Study View. diff --git a/src/main/resources/webapp/config_service.jsp b/src/main/resources/webapp/config_service.jsp index 72614eed332..e299b827085 100644 --- a/src/main/resources/webapp/config_service.jsp +++ b/src/main/resources/webapp/config_service.jsp @@ -71,6 +71,7 @@ "skin.right_nav.show_testimonials", "skin.right_nav.show_whats_new", "skin.right_nav.show_twitter", + "skin.right_nav.show_bluesky", "skin.right_nav.whats_new_blurb", "skin.right_nav.show_web_tours", "skin.show_about_tab",