diff --git a/api/common.js b/api/common.js index bed25d7c..8dc7b208 100644 --- a/api/common.js +++ b/api/common.js @@ -2,17 +2,13 @@ const request = require('request'); //TODO switch to axios! const rp = require('request-promise-native'); const keywordEx = require("keyword-extractor"); -const tmp = require('tmp'); -const path = require('path'); const child_process = require('child_process'); -const fs = require('fs'); const async = require('async'); const redis = require('redis'); const xmlescape = require('xml-escape'); const amqp = require("amqp"); //switch to amqplib? const axios = require('axios'); const jwt = require('express-jwt'); -const crypto = require('crypto'); const config = require('./config'); const db = require('./models'); diff --git a/api/config/index.js.dev b/api/config/index.js.dev index 2f20b63e..3e326957 100644 --- a/api/config/index.js.dev +++ b/api/config/index.js.dev @@ -13,8 +13,6 @@ const request = require('request'); //deprecate! const zlib = require('zlib'); const async = require('async'); -const atob = require('atob'); - exports.mongodb = "mongodb://brainlife_mongodb/warehouse"; exports.debug = true; diff --git a/api/lib/provenance.js b/api/lib/provenance.js index a4456ce4..f1d3e999 100644 --- a/api/lib/provenance.js +++ b/api/lib/provenance.js @@ -7,8 +7,6 @@ const mongoose = require('mongoose'); const common = require('../common'); const dbscan = require('@cdxoo/dbscan'); -const math = require('mathjs'); - exports.traverseProvenance = async (startTaskId) => { console.debug("traversing from task:", startTaskId); diff --git a/package-lock.json b/package-lock.json index 60b0cebc..aecf7b6e 100644 --- a/package-lock.json +++ b/package-lock.json @@ -50,6 +50,8 @@ }, "devDependencies": { "chai": "^4.3.6", + "eslint": "^8.30.0", + "eslint-plugin-vue": "^9.8.0", "mocha": "^5.2.0", "node-geocoder": "^3.29.0", "supertest": "^3.3.0" @@ -1299,6 +1301,103 @@ "kuler": "^2.0.0" } }, + "node_modules/@eslint/eslintrc": { + "version": "1.4.0", + 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"https://registry.npmjs.org/reusify/-/reusify-1.0.4.tgz", + "integrity": "sha512-U9nH88a3fc/ekCF1l0/UP1IosiuIjyTh7hBvXVMHYgVcfGvt897Xguj2UOLDeI5BG2m7/uwyaLVT6fbtCwTyzw==", + "dev": true + }, "rimraf": { "version": "3.0.2", "resolved": "https://registry.npmjs.org/rimraf/-/rimraf-3.0.2.tgz", @@ -14024,6 +15925,15 @@ "glob": "^7.1.3" } }, + "run-parallel": { + "version": "1.2.0", + "resolved": "https://registry.npmjs.org/run-parallel/-/run-parallel-1.2.0.tgz", + "integrity": "sha512-5l4VyZR86LZ/lDxZTR6jqL8AFE2S0IFLMP26AbjsLVADxHdhB/c0GUsH+y39UfCi3dzz8OlQuPmnaJOMoDHQBA==", + "dev": true, + "requires": { + "queue-microtask": "^1.2.2" + } + }, "safe-buffer": { "version": "5.1.2", "resolved": "https://registry.npmjs.org/safe-buffer/-/safe-buffer-5.1.2.tgz", @@ -14611,6 +16521,12 @@ "resolved": "https://registry.npmjs.org/text-hex/-/text-hex-1.0.0.tgz", "integrity": "sha512-uuVGNWzgJ4yhRaNSiubPY7OjISw4sw4E5Uv0wbjp+OzcbmVU/rsT8ujgcXJhn9ypzsgr5vlzpPqP+MBBKcGvbg==" }, + "text-table": { + "version": "0.2.0", + "resolved": "https://registry.npmjs.org/text-table/-/text-table-0.2.0.tgz", + "integrity": "sha512-N+8UisAXDGk8PFXP4HAzVR9nbfmVJ3zYLAWiTIoqC5v5isinhr+r5uaO8+7r3BMfuNIufIsA7RdpVgacC2cSpw==", + "dev": true + }, "then-request": { "version": "6.0.2", "resolved": "https://registry.npmjs.org/then-request/-/then-request-6.0.2.tgz", @@ -14760,6 +16676,12 @@ "integrity": "sha512-0fr/mIH1dlO+x7TlcMy+bIDqKPsw/70tVyeHW787goQjhmqaZe10uwLujubK9q9Lg6Fiho1KUKDYz0Z7k7g5/g==", "dev": true }, + "type-fest": { + "version": "0.20.2", + "resolved": "https://registry.npmjs.org/type-fest/-/type-fest-0.20.2.tgz", + "integrity": "sha512-Ne+eE4r0/iWnpAxD852z3A+N0Bt5RN//NjJwRd2VFHEmrywxf5vsZlh4R6lixl6B+wz/8d+maTSAkN1FIkI3LQ==", + "dev": true + }, "type-is": { "version": "1.6.18", "resolved": "https://registry.npmjs.org/type-is/-/type-is-1.6.18.tgz", @@ -14881,6 +16803,38 @@ "extsprintf": "^1.2.0" } }, + "vue-eslint-parser": { + "version": "9.1.0", + "resolved": "https://registry.npmjs.org/vue-eslint-parser/-/vue-eslint-parser-9.1.0.tgz", + "integrity": "sha512-NGn/iQy8/Wb7RrRa4aRkokyCZfOUWk19OP5HP6JEozQFX5AoS/t+Z0ZN7FY4LlmWc4FNI922V7cvX28zctN8dQ==", + "dev": true, + "requires": { + "debug": "^4.3.4", + "eslint-scope": "^7.1.1", + "eslint-visitor-keys": "^3.3.0", + "espree": "^9.3.1", + "esquery": "^1.4.0", + "lodash": "^4.17.21", + "semver": "^7.3.6" + }, + "dependencies": { + "debug": { + "version": "4.3.4", + "resolved": "https://registry.npmjs.org/debug/-/debug-4.3.4.tgz", + "integrity": "sha512-PRWFHuSU3eDtQJPvnNY7Jcket1j0t5OuOsFzPPzsekD52Zl8qUfFIPEiswXqIvHWGVHOgX+7G/vCNNhehwxfkQ==", + "dev": true, + "requires": { + "ms": "2.1.2" + } + }, + "ms": { + "version": "2.1.2", + "resolved": "https://registry.npmjs.org/ms/-/ms-2.1.2.tgz", + "integrity": "sha512-sGkPx+VjMtmA6MX27oA4FBFELFCZZ4S4XqeGOXCv68tT+jb3vk/RyaKWP0PTKyWtmLSM0b+adUTEvbs1PEaH2w==", + "dev": true + } + } + }, "webidl-conversions": { "version": "7.0.0", "resolved": "https://registry.npmjs.org/webidl-conversions/-/webidl-conversions-7.0.0.tgz", @@ -15103,6 +17057,12 @@ "resolved": "https://registry.npmjs.org/xml-escape/-/xml-escape-1.1.0.tgz", "integrity": "sha512-B/T4sDK8Z6aUh/qNr7mjKAwwncIljFuUP+DO/D5hloYFj+90O88z8Wf7oSucZTHxBAsC1/CTP4rtx/x1Uf72Mg==" }, + "xml-name-validator": { + "version": "4.0.0", + "resolved": "https://registry.npmjs.org/xml-name-validator/-/xml-name-validator-4.0.0.tgz", + "integrity": "sha512-ICP2e+jsHvAj2E2lIHxa5tjXRlKDJo4IdvPvCXbXQGdzSfmSpNVyIKMvoZHjDY9DP0zV17iI85o90vRFXNccRw==", + "dev": true + }, "xml2js": { "version": "0.4.23", "resolved": "https://registry.npmjs.org/xml2js/-/xml2js-0.4.23.tgz", @@ -15315,6 +17275,12 @@ } } }, + "yocto-queue": { + "version": "0.1.0", + "resolved": "https://registry.npmjs.org/yocto-queue/-/yocto-queue-0.1.0.tgz", + "integrity": "sha512-rVksvsnNCdJ/ohGc6xgPwyN8eheCxsiLM8mxuE/t/mOVqJewPuO1miLpTHQiRgTKCLexL4MeAFVagts7HmNZ2Q==", + "dev": true + }, "zip-stream": { "version": "4.1.0", "resolved": "https://registry.npmjs.org/zip-stream/-/zip-stream-4.1.0.tgz", diff --git a/package.json b/package.json index cc85d44b..960bdb40 100644 --- a/package.json +++ b/package.json @@ -1,49 +1,41 @@ { "name": "warehouse", "version": "1.0.0", - "description": "Service that allows data warehousing and workfow orchestration", + "description": "Central data repository service", "main": "index.js", "scripts": { - "apidoc": " apidoc -i ./ -o ../docs/apidoc/", - "cover": "node_modules/istanbul/lib/cli.js cover node_modules/mocha/bin/_mocha -- -R spec test/*.js", - "deploy": "ssh -t test.brainlife.io sudo \"sudo /root/docker/warehouse/update.sh\"", - "deploy-prod": "ssh -t brainlife.io sudo \"sudo /root/docker/warehouse/update.sh\"" + "apidoc": "apidoc -i ./ -o ../docs/apidoc/", + "cover": "node_modules/istanbul/lib/cli.js cover node_modules/mocha/bin/_mocha -- -R spec test/*.js" }, "repository": { "type": "git", - "url": "git+https://github.com/brain-life/warehouse.git" + "url": "git+https://github.com/brainlife/warehouse.git" }, "author": "Soichi Hayashi (http://soichi.us)", "license": "ISC", "bugs": { - "url": "https://github.com/brain-life/warehouse/issues" + "url": "https://github.com/brainlife/warehouse/issues" }, - "homepage": "https://github.com/brain-life/warehouse#readme", + "homepage": "https://github.com/brainlife/warehouse#readme", "dependencies": { "@cdxoo/dbscan": "^1.0.2", "@influxdata/influxdb-client": "^1.29.0", "amqp": "^0.2.7", "archiver": "^5.3.1", "async": "^3.2.3", - "atob": "^2.1.2", "aws-sdk": "^2.1128.0", "axios": "^0.21.4", "body-parser": "^1.20.0", - "brainlife": "^1.5.43", "compression": "^1.7.3", "cors": "^2.8.5", - "coveralls": "^3.1.1", "crypto": "^1.0.1", "express": "^4.18.1", "express-jwt": "^6.1.2", "express-winston": "^3.0.1", "gunzip-stream": "^1.0.1", - "istanbul": "^0.4.5", "keyword-extractor": "0.0.20", - "mathjs": "^10.5.1", "mongoose": "^6.3.2", "morgan": "^1.10.0", - "n-stopwords": "^1.1.2", "nocache": "^2.0.0", "nodemailer": "^6.7.5", "pkgcloud": "^2.2.0", @@ -54,13 +46,17 @@ "ssh2": "^1.10.0", "stream-meter": "^1.0.4", "tar": "^4.4.19", - "tmp": "^0.2.1", "winston": "^3.7.2", "xml-escape": "^1.1.0", "xml2js": "^0.4.23" }, "devDependencies": { + "brainlife": "^1.5.43", + "istanbul": "^0.4.5", + "coveralls": "^3.1.1", "chai": "^4.3.6", + "eslint": "^8.30.0", + "eslint-plugin-vue": "^9.8.0", "mocha": "^5.2.0", "node-geocoder": "^3.29.0", "supertest": "^3.3.0" diff --git a/ui/config/dev.env b/ui/config/dev.env deleted file mode 100644 index c6464ea7..00000000 --- a/ui/config/dev.env +++ /dev/null @@ -1,8 +0,0 @@ -const merge = require('webpack-merge') -const prodEnv = require('./prod.env') - -module.exports = merge(prodEnv, { - NODE_ENV: '"development"', - HOSTNAME: '"localhost:8080"' -}) - diff --git a/ui/config/index.js b/ui/config/index.js index 926af854..d31576ad 100644 --- a/ui/config/index.js +++ b/ui/config/index.js @@ -6,19 +6,10 @@ module.exports = { index: path.resolve(__dirname, '../dist/index.html'), assetsRoot: path.resolve(__dirname, '../dist'), assetsSubDirectory: 'static', - //assetsPublicPath: '/warehouse/', assetsPublicPath: '/', productionSourceMap: true, - // Gzip off by default as many popular static hosts such as - // Surge or Netlify already gzip all static assets for you. - // Before setting to `true`, make sure to: - // npm install --save-dev compression-webpack-plugin productionGzip: true, productionGzipExtensions: ['js', 'css'], - // Run the build command with an extra argument to - // View the bundle analyzer report after build finishes: - // `npm run build --report` - // Set to `true` or `false` to always turn it on or off bundleAnalyzerReport: process.env.npm_config_report }, dev: { @@ -28,11 +19,6 @@ module.exports = { assetsSubDirectory: 'static', assetsPublicPath: '/', proxyTable: {}, - // CSS Sourcemaps off by default because relative paths are "buggy" - // with this option, according to the CSS-Loader README - // (https://github.com/webpack/css-loader#sourcemaps) - // In our experience, they generally work as expected, - // just be aware of this issue when enabling this option. - cssSourceMap: false + cssSourceMap: true, }, } diff --git a/ui/config/prod.env.js b/ui/config/prod.env.js index 175e2c7c..01757312 100644 --- a/ui/config/prod.env.js +++ b/ui/config/prod.env.js @@ -1,10 +1,4 @@ - -//if you update this, you will need to restart your dev server module.exports = { NODE_ENV: '"production"', - - //from https://analytics.google.com/analytics/web/#/a118407195p290529241/admin/streams/table/3007805011 - //GTAG: '"G-J5H19RMNCT"', //measurement ID - GTAG: '"UA-118407195-1"', //tracking ID (dheeraj says we need to use this instead) + GTAG: '"UA-118407195-1"', } - diff --git a/ui/run.sh b/ui/run.sh deleted file mode 100755 index b6974b6a..00000000 --- a/ui/run.sh +++ /dev/null @@ -1,7 +0,0 @@ -docker rm -f warehouse-dev -docker run --restart unless-stopped \ - --name warehouse-dev \ - --net host \ - -v `pwd`:/app \ - -w /app \ - -d node:10 npm run dev diff --git a/ui/src/apps.vue b/ui/src/apps.vue index 8003c402..8b82da9b 100644 --- a/ui/src/apps.vue +++ b/ui/src/apps.vue @@ -29,16 +29,6 @@ My Apps

-
- -
-
- -
-
- -
-
diff --git a/ui/src/appsgraph.vue b/ui/src/appsgraph.vue deleted file mode 100644 index 7dc158de..00000000 --- a/ui/src/appsgraph.vue +++ /dev/null @@ -1,154 +0,0 @@ - - - - - - diff --git a/ui/src/apptest.vue b/ui/src/apptest.vue deleted file mode 100644 index ba188dba..00000000 --- a/ui/src/apptest.vue +++ /dev/null @@ -1,108 +0,0 @@ - - - - - diff --git a/ui/src/components/datasets.vue b/ui/src/components/datasets.vue index c59fd11f..2f27f33f 100644 --- a/ui/src/components/datasets.vue +++ b/ui/src/components/datasets.vue @@ -747,7 +747,7 @@ export default { get_instance() { //first create an instance to download things to - return this.$http.post(Vue.config.wf_api+'/instance', { + return this.$http.post(Vue.config.amaretti_api+'/instance', { name: "brainlife.download", config: { selected: this.selected, @@ -771,7 +771,7 @@ export default { this.submit_process(opt.project_id, opt.instance); } else { //need to create a new instance - this.$http.post(Vue.config.wf_api+'/instance', { + this.$http.post(Vue.config.amaretti_api+'/instance', { desc: opt.desc, config: { brainlife: true, diff --git a/ui/src/components/dtv.vue b/ui/src/components/dtv.vue index 5088cf14..dc1b5142 100644 --- a/ui/src/components/dtv.vue +++ b/ui/src/components/dtv.vue @@ -94,7 +94,7 @@ export default { methods: { /* loadProduct() { - this.$http.get(Vue.config.wf_api+'/task/product/', {params: {ids: [this.task._id]}}).then(res=>{ + this.$http.get(Vue.config.amaretti_api+'/task/product/', {params: {ids: [this.task._id]}}).then(res=>{ if(res.data.length == 1) { this.product = res.data[0].product; } else { diff --git a/ui/src/components/filebrowser.vue b/ui/src/components/filebrowser.vue index 2888934d..866a4805 100644 --- a/ui/src/components/filebrowser.vue +++ b/ui/src/components/filebrowser.vue @@ -126,7 +126,7 @@ export default { return subpath; }, get_download_url(file) { - var url = Vue.config.wf_api+'/task/download/'+this.task._id+'/'; + var url = Vue.config.amaretti_api+'/task/download/'+this.task._id+'/'; var p = this.subpath(file); if(p) url += p; url += '?at='+Vue.config.jwt; @@ -138,7 +138,7 @@ export default { document.location = url; }, load() { - var url = Vue.config.wf_api+'/task/ls/'+this.task._id; + var url = Vue.config.amaretti_api+'/task/ls/'+this.task._id; if(this.path) url += '?p='+encodeURIComponent(this.path); this.$http.get(url).then(res=>{ this.files = res.data.files.sort((a, b)=>{ diff --git a/ui/src/components/groupanalysis.vue b/ui/src/components/groupanalysis.vue index 06c8e4fb..98b89165 100644 --- a/ui/src/components/groupanalysis.vue +++ b/ui/src/components/groupanalysis.vue @@ -317,7 +317,7 @@ export default { }, stop(task) { - this.$http.put(Vue.config.wf_api+'/task/stop/'+task._id) + this.$http.put(Vue.config.amaretti_api+'/task/stop/'+task._id) .then(res=>{ this.$notify({ text: res.data.message, type: 'success'}); }) diff --git a/ui/src/components/processes.vue b/ui/src/components/processes.vue index eb33645a..cd9ff258 100644 --- a/ui/src/components/processes.vue +++ b/ui/src/components/processes.vue @@ -288,7 +288,7 @@ export default { this.selected.desc = desc; clearTimeout(debounce); debounce = setTimeout(()=>{ - this.$http.put(Vue.config.wf_api+'/instance/'+this.selected._id, this.selected).then(res=>{ + this.$http.put(Vue.config.amaretti_api+'/instance/'+this.selected._id, this.selected).then(res=>{ this.$notify({ text: 'Updated description', type: 'success' }); }); }, 1000); @@ -350,7 +350,7 @@ export default { newinstance() { let desc = prompt("Please enter process description"); if(!desc) return; - this.$http.post(Vue.config.wf_api+'/instance', { + this.$http.post(Vue.config.amaretti_api+'/instance', { desc, config: { brainlife: true, @@ -386,7 +386,7 @@ export default { } //console.log("loading instances for group", this.project.group_id); - this.$http.get(Vue.config.wf_api+'/instance', {params: { + this.$http.get(Vue.config.amaretti_api+'/instance', {params: { find: JSON.stringify({ "config.brainlife": true, status: {$ne: "removed"}, diff --git a/ui/src/components/task.vue b/ui/src/components/task.vue index 23b0aedb..88d9ff05 100644 --- a/ui/src/components/task.vue +++ b/ui/src/components/task.vue @@ -249,7 +249,7 @@ export default { }, rerun() { - this.$http.put(Vue.config.wf_api+'/task/rerun/'+this.task._id) + this.$http.put(Vue.config.amaretti_api+'/task/rerun/'+this.task._id) .then(res=>{ this.$notify({ text: res.data.message, type: 'success'}); }) @@ -259,7 +259,7 @@ export default { }, stop() { - this.$http.put(Vue.config.wf_api+'/task/stop/'+this.task._id) + this.$http.put(Vue.config.amaretti_api+'/task/stop/'+this.task._id) .then(res=>{ this.$notify({ text: res.data.message, type: 'success'}); }) @@ -269,7 +269,7 @@ export default { }, remove() { - this.$http.delete(Vue.config.wf_api+'/task/'+this.task._id) + this.$http.delete(Vue.config.amaretti_api+'/task/'+this.task._id) .then(res=>{ this.$notify({ title: 'Removing Task', text: 'Task removal requested', type: 'success', }); this.$emit("remove", this.task._id); @@ -280,7 +280,7 @@ export default { }, poke() { - this.$http.put(Vue.config.wf_api+'/task/poke/'+this.task._id) + this.$http.put(Vue.config.amaretti_api+'/task/poke/'+this.task._id) .then(res=>{ this.$notify({text: res.data.message, type: 'success'}); }) diff --git a/ui/src/components/taskconfig.vue b/ui/src/components/taskconfig.vue index 5cb5b08f..1bd6871c 100644 --- a/ui/src/components/taskconfig.vue +++ b/ui/src/components/taskconfig.vue @@ -61,7 +61,7 @@ export default { this.load_config(this.task.config); } else { if(!this.taskid) return; - this.$http.get(Vue.config.wf_api+'/task/'+this.taskid).then(res=>{ + this.$http.get(Vue.config.amaretti_api+'/task/'+this.taskid).then(res=>{ this.load_config(res.data.config); }); } diff --git a/ui/src/dashboard.vue b/ui/src/dashboard.vue index a58c9ca5..a12b0722 100644 --- a/ui/src/dashboard.vue +++ b/ui/src/dashboard.vue @@ -1,8 +1,5 @@ @@ -99,12 +69,7 @@ import contact from '@/components/contact' import authprofilecache from '@/mixins/authprofilecache' import resource_cache from '@/mixins/resource_cache' -/* -import vis from 'vis/dist/vis.min.js' -import 'vis/dist/vis.min.css' -*/ - -const lib = require('@/lib'); //for avatar_url +const lib = require('@/lib') export default { mixins: [authprofilecache, resource_cache], @@ -112,7 +77,6 @@ export default { pageheader, statusicon, contact, - //vis, }, data () { @@ -120,7 +84,7 @@ export default { recent_users: null, recent_tasks: null, - projects: {}, //group_id to project lookup + projects: {}, reloader: null, config: Vue.config, @@ -131,83 +95,20 @@ export default { clearInterval(this.reloader); }, - mounted() { - - setInterval(this.reload, 1000*30); + setInterval(this.reload, 1000 * 30); this.reload(); - - //load other minor things.. - let days = 30; - if(Vue.config.debug) days = 360; - this.$http.get(Vue.config.auth_api+"/profile/recreg/"+days).then(res=>{ - this.recent_users = res.data.users; - - //load public profiles for each users - this.recent_users.forEach(u=>{ - this.authprofilecache(u.sub, (err, user)=>{ - Vue.set(u, '_profile', user.profile.public); - }); - }); - }).catch(console.error); - - }, methods: { avatar_url: lib.avatar_url, - /* - async update_resource_vis() { - var groups = new vis.DataSet(); - let gid = 0; - let items = []; - //let min_time = null; - //let max_time = null; - for(let gid = 0; gid < this.resources.length;++gid) { - let resource = this.resources[gid]; - groups.add({ - id: gid, - content: resource.name, - options: { - shaded: { - orientation: 'bottom' - } - } - }); - let res = await this.$http.get(Vue.config.amaretti_api+'/resource/'+resource._id+'/metrics'); - res.data.forEach(d=>{ - let count = d[0]; - let time = d[1]*1000; - //if(min_time === null || min_time > time) min_time = time; - //if(max_time === null || max_time < time) max_time = time; - items.push({ - y: count, - x: time, - group: gid, - }); - }); - } - let dataset = new vis.DataSet(items); - let graph2d = new vis.Graph2d(this.$refs.resource_vis, dataset, groups, { - drawPoints: false, - legend: true, - //start: min_time, - //end: max_time, - }); - }, - */ - opentask(task) { let project = this.projects[task._group_id]; this.$router.push("/project/"+project._id+"/process/"+task.instance_id+"#"+task._id) }, reload() { - console.log("reloading data"); - - //let recent_date = new Date(); - //recent_date.setDate(recent_date.getDate()-30); let find = JSON.stringify({ status: {$nin: ["removed", "stopped"]}, service: {$nin: ["brainlife/app-stage"]}, diff --git a/ui/src/datauis/dtiinit.vue b/ui/src/datauis/dtiinit.vue index 84194d84..493cbb51 100644 --- a/ui/src/datauis/dtiinit.vue +++ b/ui/src/datauis/dtiinit.vue @@ -20,7 +20,7 @@ export default { mounted() { var basepath = ""; if(this.subdir) basepath+=this.subdir+"/"; - this.url = Vue.config.wf_api+'/task/download/'+this.task._id+'/'+basepath+'dti/t1pdd.png'+'?at='+Vue.config.jwt; + this.url = Vue.config.amaretti_api+'/task/download/'+this.task._id+'/'+basepath+'dti/t1pdd.png'+'?at='+Vue.config.jwt; } } diff --git a/ui/src/datauis/images.vue b/ui/src/datauis/images.vue index 312086b2..0882c5ee 100644 --- a/ui/src/datauis/images.vue +++ b/ui/src/datauis/images.vue @@ -37,11 +37,11 @@ export default { // Load image.json var basepath = ""; if(this.subdir) basepath+=this.subdir+"/"; - var url = Vue.config.wf_api+'/task/download/'+this.task._id+'/'+basepath+'images.json'+'?at='+Vue.config.jwt; + var url = Vue.config.amaretti_api+'/task/download/'+this.task._id+'/'+basepath+'images.json'+'?at='+Vue.config.jwt; this.$http.get(url).then(res=>{ //console.dir(res.data); res.data.images.forEach(image=>{ - var src = Vue.config.wf_api+'/task/download/'+this.task._id+'/'+basepath+image.filename+'?at='+Vue.config.jwt; + var src = Vue.config.amaretti_api+'/task/download/'+this.task._id+'/'+basepath+image.filename+'?at='+Vue.config.jwt; this.images.push({ name: image.name, desc: image.desc, diff --git a/ui/src/datauis/surfaces.vue b/ui/src/datauis/surfaces.vue index 3b7a32cb..6eb9cea8 100644 --- a/ui/src/datauis/surfaces.vue +++ b/ui/src/datauis/surfaces.vue @@ -26,7 +26,7 @@ export default { var basepath = ""; if(subdir) basepath += subdir+"/"; - let url_surfaces_json = Vue.config.wf_api+"/task/download/"+this.task._id+"/"+basepath+"surfaces/surfaces.json"+"?at="+Vue.config.jwt; + let url_surfaces_json = Vue.config.amaretti_api+"/task/download/"+this.task._id+"/"+basepath+"surfaces/surfaces.json"+"?at="+Vue.config.jwt; this.$http.get(url_surfaces_json) .then(res => { @@ -34,16 +34,16 @@ export default { surfaces.forEach(surface => { surface.basename = surface.name||surface.filename; //surface.filename is deprecated? let filepath = surface.path||surface.filename; //surface.filename is deprecated? - surface.filename = Vue.config.wf_api+"/task/download/"+this.task._id+"/"+basepath+"surfaces/"+filepath+"?at="+Vue.config.jwt; + surface.filename = Vue.config.amaretti_api+"/task/download/"+this.task._id+"/"+basepath+"surfaces/"+filepath+"?at="+Vue.config.jwt; }); cb(surfaces); }).catch(err => { // old code to use in case surfaces.json doesn't exist - this.$http.get(Vue.config.wf_api+"/task/ls/"+this.task._id+"?p="+encodeURIComponent(basepath+"surfaces")) + this.$http.get(Vue.config.amaretti_api+"/task/ls/"+this.task._id+"?p="+encodeURIComponent(basepath+"surfaces")) .then(res=>{ var surfaces = []; res.data.files.forEach(file=>{ - var url = Vue.config.wf_api+"/task/download/"+this.task._id+"/"+basepath+"surfaces/"+file.filename+"?at="+Vue.config.jwt; + var url = Vue.config.amaretti_api+"/task/download/"+this.task._id+"/"+basepath+"surfaces/"+file.filename+"?at="+Vue.config.jwt; surfaces.push({ name: file.filename.substring(0, file.filename.length-4), path: url }); }); cb(surfaces); diff --git a/ui/src/icons.js b/ui/src/icons.js new file mode 100644 index 00000000..1b1d4613 --- /dev/null +++ b/ui/src/icons.js @@ -0,0 +1,109 @@ +import 'vue-awesome/icons/robot.js' +import 'vue-awesome/icons/paper-plane.js' +import 'vue-awesome/icons/vial.js' +import 'vue-awesome/icons/search.js' +import 'vue-awesome/icons/th.js' +import 'vue-awesome/icons/list.js' +import 'vue-awesome/icons/list-alt.js' +import 'vue-awesome/icons/lock.js' +import 'vue-awesome/icons/ban.js' +import 'vue-awesome/icons/home.js' +import 'vue-awesome/icons/th-large.js' +import 'vue-awesome/icons/code-branch.js' +import 'vue-awesome/icons/caret-right.js' +import 'vue-awesome/icons/caret-up.js' +import 'vue-awesome/icons/caret-down.js' +import 'vue-awesome/icons/chart-area.js' +import 'vue-awesome/icons/code.js' +import 'vue-awesome/icons/newspaper.js' +import 'vue-awesome/icons/cog.js' +import 'vue-awesome/icons/archive.js' +import 'vue-awesome/icons/bars.js' +import 'vue-awesome/icons/wrench.js' +import 'vue-awesome/icons/biohazard.js' +import 'vue-awesome/icons/sign-in-alt.js' +import 'vue-awesome/icons/sign-out-alt.js' +import 'vue-awesome/icons/sticky-note.js' +import 'vue-awesome/icons/external-link-alt.js' +import 'vue-awesome/icons/exclamation.js' +import 'vue-awesome/icons/exclamation-triangle.js' +import 'vue-awesome/icons/exclamation-circle.js' +import 'vue-awesome/icons/question-circle.js' +import 'vue-awesome/icons/question.js' +import 'vue-awesome/icons/copy.js' +import 'vue-awesome/icons/cubes.js' +import 'vue-awesome/icons/cube.js' +import 'vue-awesome/icons/server.js' +import 'vue-awesome/icons/id-badge.js' +import 'vue-awesome/icons/eye.js' +import 'vue-awesome/icons/play.js' +import 'vue-awesome/icons/calendar.js' +import 'vue-awesome/icons/download.js' +import 'vue-awesome/icons/certificate.js' +import 'vue-awesome/icons/cloud.js' +import 'vue-awesome/icons/cloud-download-alt.js' +import 'vue-awesome/icons/edit.js' +import 'vue-awesome/icons/indent.js' +import 'vue-awesome/icons/sort.js' +import 'vue-awesome/icons/stop.js' +import 'vue-awesome/icons/stop-circle.js' +import 'vue-awesome/icons/info.js' +import 'vue-awesome/icons/hand-paper.js' +import 'vue-awesome/icons/handshake.js' +import 'vue-awesome/icons/redo.js' +import 'vue-awesome/icons/trash.js' +import 'vue-awesome/icons/ellipsis-v.js' +import 'vue-awesome/icons/angle-left.js' +import 'vue-awesome/icons/shield-alt.js' +import 'vue-awesome/icons/times.js' +import 'vue-awesome/icons/check.js' +import 'vue-awesome/icons/check-square.js' +import 'vue-awesome/icons/chevron-left.js' +import 'vue-awesome/icons/chevron-right.js' +import 'vue-awesome/icons/check-circle.js' +import 'vue-awesome/icons/star.js' +import 'vue-awesome/icons/flask.js' +import 'vue-awesome/icons/envelope.js' +import 'vue-awesome/icons/user.js' +import 'vue-awesome/icons/user-cog.js' +import 'vue-awesome/icons/university.js' +import 'vue-awesome/icons/users.js' +import 'vue-awesome/icons/user-friends.js' +import 'vue-awesome/icons/fire-alt.js' +import 'vue-awesome/icons/arrow-up.js' +import 'vue-awesome/icons/arrow-down.js' +import 'vue-awesome/icons/arrow-right.js' +import 'vue-awesome/icons/arrow-left.js' +import 'vue-awesome/icons/arrows-alt-v.js' +import 'vue-awesome/icons/info-circle.js' +import 'vue-awesome/icons/circle.js' +import 'vue-awesome/icons/dot-circle.js' +import 'vue-awesome/icons/sync-alt.js' +import 'vue-awesome/icons/book.js' +import 'vue-awesome/icons/file-signature.js' +import 'vue-awesome/icons/file.js' +import 'vue-awesome/icons/hourglass.js' +import 'vue-awesome/icons/hourglass-half.js' +import 'vue-awesome/icons/thumbs-up.js' +import 'vue-awesome/icons/folder.js' +import 'vue-awesome/icons/clock.js' +import 'vue-awesome/icons/folder-open.js' +import 'vue-awesome/icons/minus.js' +import 'vue-awesome/icons/plus.js' +import 'vue-awesome/icons/link.js' +import 'vue-awesome/icons/brands/slack.js' +import 'vue-awesome/icons/brands/github.js' +import 'vue-awesome/icons/brands/orcid.js' +import 'vue-awesome/icons/brands/docker.js' +import 'vue-awesome/icons/brands/twitter.js' +import 'vue-awesome/icons/brands/facebook.js' +import 'vue-awesome/icons/brands/google-plus.js' +import 'vue-awesome/icons/brands/google.js' +import 'vue-awesome/icons/brands/linkedin.js' +import 'vue-awesome/icons/brands/pinterest.js' +import 'vue-awesome/icons/brands/reddit.js' +import 'vue-awesome/icons/brands/skype.js' +import 'vue-awesome/icons/brands/weibo.js' +import 'vue-awesome/icons/regular/file.js' +import 'vue-awesome/icons/regular/calendar-times.js' +import 'vue-awesome/icons/skull-crossbones.js' diff --git a/ui/src/main.js b/ui/src/main.js index a3336c00..c5db146f 100644 --- a/ui/src/main.js +++ b/ui/src/main.js @@ -3,176 +3,55 @@ import 'bootstrap/dist/css/bootstrap.min.css' import 'bootstrap-vue/dist/bootstrap-vue.min.css' import 'select2/dist/css/select2.css' -//import 'highlight.js/styles/default.css' +// import 'highlight.js/styles/default.css' import 'katex/dist/katex.min.css' import 'vue2-animate/dist/vue2-animate.min.css' -//3rd parties import 'jquery/dist/jquery.js' import 'select2/dist/js/select2.js' import Vue from 'vue' -import 'vue-select/dist/vue-select.css'; -import vSelect from 'vue-select' +import 'vue-select/dist/vue-select.css' +import vSelect from 'vue-select' import 'perfect-scrollbar/css/perfect-scrollbar.css' -//import VueHighlightJS from 'vue-highlightjs' - -//https://www.npmjs.com/package/vue-notification -import Notifications from 'vue-notification' //override element-ui ugly $notify.. - -//TODO really~!? -import 'vue-awesome/icons/robot.js' -import 'vue-awesome/icons/paper-plane.js' -import 'vue-awesome/icons/vial.js' -import 'vue-awesome/icons/search.js' -import 'vue-awesome/icons/th.js' -import 'vue-awesome/icons/list.js' -import 'vue-awesome/icons/list-alt.js' -import 'vue-awesome/icons/lock.js' -import 'vue-awesome/icons/ban.js' -import 'vue-awesome/icons/home.js' -import 'vue-awesome/icons/th-large.js' -import 'vue-awesome/icons/code-branch.js' -import 'vue-awesome/icons/caret-right.js' -import 'vue-awesome/icons/caret-up.js' -import 'vue-awesome/icons/caret-down.js' -import 'vue-awesome/icons/chart-area.js' -import 'vue-awesome/icons/code.js' -import 'vue-awesome/icons/newspaper.js' -import 'vue-awesome/icons/cog.js' -import 'vue-awesome/icons/archive.js' -import 'vue-awesome/icons/bars.js' -import 'vue-awesome/icons/wrench.js' -import 'vue-awesome/icons/biohazard.js' -import 'vue-awesome/icons/sign-in-alt.js' -import 'vue-awesome/icons/sign-out-alt.js' -import 'vue-awesome/icons/sticky-note.js' -import 'vue-awesome/icons/external-link-alt.js' -import 'vue-awesome/icons/exclamation.js' -import 'vue-awesome/icons/exclamation-triangle.js' -import 'vue-awesome/icons/exclamation-circle.js' -import 'vue-awesome/icons/question-circle.js' -import 'vue-awesome/icons/question.js' -import 'vue-awesome/icons/copy.js' -import 'vue-awesome/icons/cubes.js' -import 'vue-awesome/icons/cube.js' -import 'vue-awesome/icons/server.js' -import 'vue-awesome/icons/id-badge.js' -import 'vue-awesome/icons/eye.js' -import 'vue-awesome/icons/play.js' -import 'vue-awesome/icons/calendar.js' -import 'vue-awesome/icons/download.js' -import 'vue-awesome/icons/certificate.js' -import 'vue-awesome/icons/cloud.js' -import 'vue-awesome/icons/cloud-download-alt.js' -import 'vue-awesome/icons/edit.js' -import 'vue-awesome/icons/indent.js' -import 'vue-awesome/icons/sort.js' -import 'vue-awesome/icons/stop.js' -import 'vue-awesome/icons/stop-circle.js' -import 'vue-awesome/icons/info.js' -import 'vue-awesome/icons/hand-paper.js' -import 'vue-awesome/icons/handshake.js' -import 'vue-awesome/icons/redo.js' -import 'vue-awesome/icons/trash.js' -import 'vue-awesome/icons/ellipsis-v.js' -import 'vue-awesome/icons/angle-left.js' -import 'vue-awesome/icons/shield-alt.js' -import 'vue-awesome/icons/times.js' -import 'vue-awesome/icons/check.js' -import 'vue-awesome/icons/check-square.js' -import 'vue-awesome/icons/chevron-left.js' -import 'vue-awesome/icons/chevron-right.js' -import 'vue-awesome/icons/check-circle.js' -import 'vue-awesome/icons/star.js' -import 'vue-awesome/icons/flask.js' -import 'vue-awesome/icons/envelope.js' -import 'vue-awesome/icons/user.js' -import 'vue-awesome/icons/user-cog.js' -import 'vue-awesome/icons/university.js' -import 'vue-awesome/icons/users.js' -import 'vue-awesome/icons/user-friends.js' -import 'vue-awesome/icons/fire-alt.js' -import 'vue-awesome/icons/arrow-up.js' -import 'vue-awesome/icons/arrow-down.js' -import 'vue-awesome/icons/arrow-right.js' -import 'vue-awesome/icons/arrow-left.js' -import 'vue-awesome/icons/arrows-alt-v.js' -import 'vue-awesome/icons/info-circle.js' -import 'vue-awesome/icons/circle.js' -import 'vue-awesome/icons/dot-circle.js' -import 'vue-awesome/icons/sync-alt.js' -import 'vue-awesome/icons/book.js' -import 'vue-awesome/icons/file-signature.js' -import 'vue-awesome/icons/file.js' -import 'vue-awesome/icons/hourglass.js' -import 'vue-awesome/icons/hourglass-half.js' -import 'vue-awesome/icons/thumbs-up.js' -import 'vue-awesome/icons/folder.js' -import 'vue-awesome/icons/clock.js' -import 'vue-awesome/icons/folder-open.js' -import 'vue-awesome/icons/minus.js' -import 'vue-awesome/icons/plus.js' -import 'vue-awesome/icons/link.js' -import 'vue-awesome/icons/brands/slack.js' -import 'vue-awesome/icons/brands/github.js' -import 'vue-awesome/icons/brands/orcid.js' -import 'vue-awesome/icons/brands/docker.js' -import 'vue-awesome/icons/brands/twitter.js' -import 'vue-awesome/icons/brands/facebook.js' -import 'vue-awesome/icons/brands/google-plus.js' -import 'vue-awesome/icons/brands/google.js' -import 'vue-awesome/icons/brands/linkedin.js' -import 'vue-awesome/icons/brands/pinterest.js' -import 'vue-awesome/icons/brands/reddit.js' -import 'vue-awesome/icons/brands/skype.js' -import 'vue-awesome/icons/brands/weibo.js' -import 'vue-awesome/icons/regular/file.js' -import 'vue-awesome/icons/regular/calendar-times.js' -import 'vue-awesome/icons/skull-crossbones.js' +import Notifications from 'vue-notification' + +import './icons' import Icon from 'vue-awesome/components/Icon' import VueLazyload from 'vue-lazyload' -import BootstrapVue from 'bootstrap-vue' //bootstrap will eventually replace ElementUI / locale +import BootstrapVue from 'bootstrap-vue' import router from './router.js' import warehouse from './warehouse' import VueTimeago from 'vue-timeago' -//import SocialSharing from 'vue-social-sharing'; +import VueDisqus from 'vue-disqus' + +import toNow from 'date-fns/distance_in_words_to_now' -import VueGtag from 'vue-gtag' +// import SocialSharing from 'vue-social-sharing' +// import VueGtag from 'vue-gtag' import axios from 'axios' import VueAxios from 'vue-axios' -import {parseBibFile} from "bibtex"; +import numeral from 'numeral' +import JWTDecode from 'jwt-decode' Vue.component('v-select', vSelect) Vue.component('icon', Icon) -import VueDisqus from 'vue-disqus'; - -import toNow from 'date-fns/distance_in_words_to_now' - Vue.use(VueDisqus) Vue.use(VueAxios, axios) -Vue.use(Notifications); +Vue.use(Notifications) Vue.use(VueLazyload) -Vue.use(BootstrapVue, { - /*doesn't seem to work - //https://github.com/bootstrap-vue/bootstrap-vue/issues/3169#issuecomment-758212291 - bvToast: { - title: "Alert", - autoHideDelay: 1000, - } - */ -}); +Vue.use(BootstrapVue) -//Vue.use(SocialSharing); +// Vue.use(SocialSharing) Vue.use(VueTimeago, { name: 'timeago', @@ -180,90 +59,70 @@ Vue.use(VueTimeago, { converter: (date, locale, converterOptions) => { const { includeSeconds, addSuffix = true } = converterOptions return toNow(date, { - locale, - includeSeconds, - addSuffix - }).replace("less than a minute ago", "just now") - .replace("in less than a minute", "just now") - .replace("about ", "~"); + locale, + includeSeconds, + addSuffix + }) + .replace('less than a minute ago', 'just now') + .replace('in less than a minute', 'just now') + .replace('about ', '~') } -}); - -/////////////////////////////////////// main ///////////////////////////////////// - -var jwt_decode = require('jwt-decode'); +}) Vue.filter('filesize', function (num) { - // jacked from: https://github.com/sindresorhus/pretty-bytes + // https://github.com/sindresorhus/pretty-bytes if (typeof num !== 'number' || isNaN(num)) { - throw new TypeError('Expected a number'); + throw new TypeError('Expected a number') } - var exponent; - var unit; - var neg = num < 0; - var units = ['B', 'kB', 'MB', 'GB', 'TB', 'PB', 'EB', 'ZB', 'YB']; + const neg = num < 0 + const units = ['B', 'kB', 'MB', 'GB', 'TB', 'PB', 'EB', 'ZB', 'YB'] if (neg) { - num = -num; + num = -num } if (num < 1) { - return (neg ? '-' : '') + num + ' B'; + return (neg ? '-' : '') + num + ' B' } - exponent = Math.min(Math.floor(Math.log(num) / Math.log(1000)), units.length - 1); - num = (num / Math.pow(1000, exponent)).toFixed(2) * 1; - unit = units[exponent]; + const exponent = Math.min(Math.floor(Math.log(num) / Math.log(1000)), units.length - 1) + const unit = units[exponent] + num = (num / Math.pow(1000, exponent)).toFixed(2) * 1 - return (neg ? '-' : '') + num + ' ' + unit; -}); - -Vue.filter('capitalize', v=>{ - return v.toUpperCase(); -}); + return (neg ? '-' : '') + num + ' ' + unit +}) -const numeral = require('numeral'); -Vue.filter('formatNumber', v=>{ - return numeral(v).format("0,0"); -}); +Vue.filter('capitalize', v => v.toUpperCase()) +Vue.filter('formatNumber', v => numeral(v).format('0,0')) -/////////////////////////////////////////////////////////////////////////////////////////////////// -// -// config -// TODO - find a way to put these somewhere under /config -// +const host = process.env.HOSTNAME || window.location.hostname +const httpProtocol = location.protocol +const wsProtocol = httpProtocol === 'https:' ? 'wss:' : 'ws:' +const apiHost = `${httpProtocol}//${host}` +const wsHost = `${wsProtocol}//${host}` +const soundUri = 'https://raw.githubusercontent.com/brainlife/warehouse/master/ui/sounds/' -let wsproto = (location.protocol == "https:") ? "wss:" : "ws:"; +Vue.config.debug = false -let apihost = location.protocol+"//"+window.location.hostname; -let apihost_ws = wsproto+"//"+window.location.hostname; +Vue.config.api = `${apiHost}/api/warehouse` +Vue.config.amaretti_api = `${apiHost}/api/amaretti` +Vue.config.auth_api = `${apiHost}/api/auth` +Vue.config.event_api = `${apiHost}/api/event` +Vue.config.event_ws = `${wsHost}/api/event` -//override api hostname (from config/*.env.js) -if (process.env.HOSTNAME) { - apihost = location.protocol+"//"+process.env.HOSTNAME; - apihost_ws = wsproto+"//"+process.env.HOSTNAME; -} +Vue.config.auth_signin = '/auth/#!/signin' +Vue.config.auth_signout = '/auth/#!/signout' +Vue.config.auth_signup = '/auth/#!/signup' +Vue.config.ezbids_api = `${apiHost}/api/ezbids` +Vue.config.debug_doi = '10.25663/bl.p.3' // o3d publication -Vue.config.debug = false; -Vue.config.api = apihost+"/api/warehouse"; -Vue.config.wf_api = apihost+"/api/amaretti"; //deprecated by amaretti_api -Vue.config.amaretti_api = apihost+"/api/amaretti"; -Vue.config.auth_api = apihost+"/api/auth"; -Vue.config.event_api = apihost+"/api/event"; -Vue.config.event_ws = apihost_ws+"/api/event"; -Vue.config.auth_signin = "/auth/#!/signin"; -Vue.config.auth_signout = "/auth/#!/signout"; -Vue.config.auth_signup = "/auth/#!/signup"; -Vue.config.ezbids_api = apihost+"/api/ezbids"; -Vue.config.productionTip = false; -Vue.config.debug_doi = "10.25663/bl.p.3"; //o3d publication Vue.config.plotly = { font: { font: 'Arial,sans-serif,Apple Color Emoji,Segoe UI Emoji', size: 11, }, -}; +} Vue.config.hasRole = function (role, service = 'warehouse') { return ( @@ -274,32 +133,13 @@ Vue.config.hasRole = function (role, service = 'warehouse') { } Vue.config.isSu = function () { - return !!localStorage.getItem('su-jwt'); + return !!localStorage.getItem('su-jwt') } -axios.defaults.baseURL = Vue.config.api; //default root for $http - -/* -console.log("ENV", process.env.NODE_ENV); -if (process.env.NODE_ENV == "development") { - Vue.config.debug = true; - - //do crosssite auth between localhost and dev1 auth - Vue.config.auth_signin = "//"+process.env.HOSTNAME+"/auth#!/signin?app=dev"; - Vue.config.auth_signout = "//"+process.env.HOSTNAME+"/auth#!/signout?app=dev"; - Vue.config.ezbids_api = "//"+process.env.HOSTNAME+"/api/ezbids"; - - //intercept jwt sent via url parameter - var urlParams = new URLSearchParams(window.location.search); - if(urlParams.has('jwt')) { - localStorage.setItem("jwt", urlParams.get('jwt')); - window.location.search = ""; - } -} -*/ +axios.defaults.baseURL = Vue.config.api -function jwt_decode_brainlife(jwt) { - Vue.config.user = jwt_decode(jwt) +function setUpJWT (jwt) { + Vue.config.user = JWTDecode(jwt) Vue.config.jwt = jwt Vue.config.user.sub = `${Vue.config.user.sub}` @@ -308,178 +148,179 @@ function jwt_decode_brainlife(jwt) { Vue.config.jwt = localStorage.getItem('jwt') if (Vue.config.jwt) { - jwt_decode_brainlife(Vue.config.jwt) + setUpJWT(Vue.config.jwt) } router.beforeEach(function (to, from, next) { - if (to.matched.length == 0) { - console.log("no match for router"); - document.location = "/404"; - return; + if (to.matched.length === 0) { + document.location = '/404' + return } + if (!to.meta) to.meta = {} + // redirect to auth unless route is public - if (!to.meta) to.meta = {}; if (!to.meta.public && !Vue.config.jwt) { - console.log("authentication required", document.location.href); - if(!Vue.config.debug) { - sessionStorage.setItem('auth_redirect', document.location.href); - document.location = Vue.config.auth_signin; + if (!Vue.config.debug) { + sessionStorage.setItem('auth_redirect', document.location.href) + document.location = Vue.config.auth_signin } - return; + return } - window.scrollTo(0, 0); //scroll to top on route update (sensible default.. or bad practice?) - next(); -}); + // scroll to the top of the page + window.scrollTo(0, 0) + next() +}) -/* //disabled due to GDRP -Vue.use(VueGtag, { +// disabled due to GDRP +/* +Vue.use(VueGtag, { appName: "brainlife.io", - config: { + config: { id: process.env.GTAG, - } + } }, router) */ -const soundHost = "https://raw.githubusercontent.com/brainlife/warehouse/master/ui/sounds/"; - -new Vue({ +export const app = new Vue({ el: '#app', router, template: ``, - data() { + data () { return { ready: false, - //things we can access via $root + // things we can access via $root sidemenuWide: true, rightviewOpen: null, - ezbidsSession: null, //set this to ezbids {sessionId} to open ezbidssession dialog on modal load + // ezbids sessionId, to open ezbidssession dialog on modal load + ezbidsSession: null, notificationSounds: {}, } }, components: { warehouse }, - mounted() { - let wide = localStorage.getItem("sidemenuWide"); - if(wide) this.sidemenuWide = (wide === "1"); + async mounted () { + let wide = localStorage.getItem('sidemenuWide') + if (wide) this.sidemenuWide = (wide === '1') - let ro = localStorage.getItem("rightviewOpen"); - if(ro) { - this.rightviewOpen = JSON.parse(ro); + let ro = localStorage.getItem('rightviewOpen') + if (ro) { + this.rightviewOpen = JSON.parse(ro) } else { - //open doc for new users - if(Vue.config.jwt) this.rightviewOpen = "doc"; + // open doc for new users + if (Vue.config.jwt) this.rightviewOpen = 'doc' } - //allow child component to refresh jwt - //project/submit (adding project requires jwt scope change for ac) - this.$on("refresh_jwt", this.refresh_jwt); + // allow child component to refresh jwt + // project/submit (adding project requires jwt scope change for ac) + this.$on('refresh_jwt', this.refresh_jwt) - if(!Vue.config.jwt) { - //for guest - this.ready = true; + if (!Vue.config.jwt) { + this.ready = true } else { - //for authenticated user - this.ensure_myproject(); - this.load_profile(); - - //refresh jwt on page refresh (and to get new jwt after creating new project) - this.refresh_jwt(err=>{ - this.$root.$emit("jwt_refreshed"); - this.ready = true; - }); - - //refresh in half an hour - setInterval(()=>{ - this.$root.$emit("refresh_jwt"); - }, 1000*1800); + // for authenticated user + this.ensure_myproject() + this.load_profile() + + // refresh jwt on page refresh + await this.refresh_jwt() + + this.$root.$emit('jwt_refreshed') + this.ready = true + + // refresh in 30 minutes + setInterval(() => { + this.$root.$emit('refresh_jwt') + }, 1000 * 60 * 30) } }, methods: { - toggleSideMenu() { - this.sidemenuWide = !this.sidemenuWide; - localStorage.setItem("sidemenuWide", this.sidemenuWide?"1":"0"); + toggleSideMenu () { + this.sidemenuWide = !this.sidemenuWide + localStorage.setItem('sidemenuWide', this.sidemenuWide ? '1' : '0') }, - toggleRightView(page) { - this.rightviewOpen = page; - localStorage.setItem("rightviewOpen", JSON.stringify(page)); + toggleRightView (page) { + this.rightviewOpen = page + localStorage.setItem('rightviewOpen', JSON.stringify(page)) }, - async ensure_myproject() { - if(!Vue.config.jwt) return; + async ensure_myproject () { + if (!Vue.config.jwt) return + + // TODO create project in API - //make sure user has create at least 1 project + // make sure user has create at least 1 project const res = await this.$http.get('project', {params: { find: { user_id: Vue.config.user.sub }, - limit: 1, //I just need count (0 means all) - }}); - if(res.data.projects.length) return; + limit: 1, // I just need count (0 means all) + }}) + if (res.data.projects.length) return - console.debug("let's create a default project"); await this.$http.post('project', { - name: "My Default Project", - desc: "Please use this project for testing purpose. You can update this project, or create new projects", - access: "private", + name: 'My Default Project', + desc: 'Please use this project for testing purpose. You can update this project, or create new projects', + access: 'private', admins: [Vue.config.user.sub], members: [], agreements: [], - }); - console.log("done creating default project") + }) - //we don't have good way of invalidating all projects loaded by the time we finish creating project. - //we need to reload page.. - location.reload(); + // we don't have good way of invalidating all projects loaded by the time we finish creating project. + // we need to reload page.. + location.reload() }, - async refresh_jwt(cb) { - if(!Vue.config.jwt) return; + async refresh_jwt (cb) { + if (!Vue.config.jwt) return if (Vue.config.isSu()) { - const jwt = localStorage.getItem('su-jwt'); + const jwt = localStorage.getItem('su-jwt') try { const res = await this.$http.post( `${Vue.config.auth_api}/refresh`, {}, { headers: { Authorization: `Bearer ${jwt}` } } - ); - localStorage.setItem('su-jwt', res.data.jwt); + ) + localStorage.setItem('su-jwt', res.data.jwt) } catch (error) { - localStorage.removeItem('su-jwt'); + localStorage.removeItem('su-jwt') } } try { const res = await this.$http.post(`${Vue.config.auth_api}/refresh`) - jwt_decode_brainlife(res.data.jwt); - localStorage.setItem('jwt', res.data.jwt); - if(cb) cb(); + setUpJWT(res.data.jwt) + localStorage.setItem('jwt', res.data.jwt) + if (cb) cb() } catch (error) { - sessionStorage.setItem('auth_redirect', document.location.href); - document.location = Vue.config.auth_signin; - if(cb) cb(error); + sessionStorage.setItem('auth_redirect', document.location.href) + document.location = Vue.config.auth_signin + if (cb) cb(error) } }, - load_profile() { - if(!Vue.config.jwt) return; - this.$http.get(Vue.config.auth_api+"/profile").then(res=>{ - Vue.config.profile = res.data.profile; - //this.load_notification_sounds(Vue.config.profile.private.notification.process_sound); - }).catch(console.error); + async load_profile () { + if (!Vue.config.jwt) return + try { + const res = await this.$http.get(`${Vue.config.auth_api}/profile`) + Vue.config.profile = res.data.profile + } catch (error) { + } }, - playNotification(name, theme) { - if(!theme && Vue.config.profile.private.notification) { - theme = Vue.config.profile.private.notification.process_sound; + playNotification (name, theme) { + if (!theme && Vue.config.profile.private.notification) { + theme = Vue.config.profile.private.notification.process_sound } - if(!theme) return; - new Audio(soundHost+theme+"/"+name+".mp3").play(); + if (!theme) return + + new Audio(soundUri + theme + '/' + name + '.mp3').play() }, }, }) diff --git a/ui/src/mixins/wait.js b/ui/src/mixins/wait.js index 5e083a2b..f6500c07 100644 --- a/ui/src/mixins/wait.js +++ b/ui/src/mixins/wait.js @@ -26,7 +26,7 @@ export default { this.ws = new ReconnectingWebSocket(url, null, {/*debug: Vue.config.debug,*/ reconnectInterval: 3000}); this.ws.onopen = (e)=>{ //loading the task for the first time - this.$http.get(Vue.config.wf_api+'/task', {params: { + this.$http.get(Vue.config.amaretti_api+'/task', {params: { find: JSON.stringify({ _id: taskid, }) }}).then(res=>{ this.task = res.data.tasks[0]; @@ -79,7 +79,7 @@ export default { break; case 'removed': console.debug("rerunning"); - this.$http.put(Vue.config.wf_api+'/task/rerun/'+this.taskid).then(res => { + this.$http.put(Vue.config.amaretti_api+'/task/rerun/'+this.taskid).then(res => { console.log("rerunning task"); //setTimeout(()=>{this.wait(taskid, cb)}, 1000); }); diff --git a/ui/src/modals/appsubmit.vue b/ui/src/modals/appsubmit.vue index 5a82a7c5..972b4a56 100644 --- a/ui/src/modals/appsubmit.vue +++ b/ui/src/modals/appsubmit.vue @@ -436,7 +436,7 @@ export default { if(err) return reject(err); //create an instance to run everything - this.$http.post(Vue.config.wf_api+'/instance', { + this.$http.post(Vue.config.amaretti_api+'/instance', { group_id: this.project.group_id, desc: this.form.desc||this.app.name, config: { diff --git a/ui/src/modals/copytarget.vue b/ui/src/modals/copytarget.vue index c482e826..0ad457ed 100644 --- a/ui/src/modals/copytarget.vue +++ b/ui/src/modals/copytarget.vue @@ -56,7 +56,7 @@ export default { console.error("can't find", this.project, "in project list", this.projects); return; } - this.$http.get(Vue.config.wf_api+'/instance', {params: { + this.$http.get(Vue.config.amaretti_api+'/instance', {params: { find: JSON.stringify({ "config.brainlife": true, status: {$ne: "removed"}, diff --git a/ui/src/modals/ezbidsimporter.vue b/ui/src/modals/ezbidsimporter.vue index d29b6954..ccc245f9 100644 --- a/ui/src/modals/ezbidsimporter.vue +++ b/ui/src/modals/ezbidsimporter.vue @@ -238,7 +238,7 @@ export default { }, cancelImport() { - this.$http.put(Vue.config.wf_api+'/task/stop/'+this.task._id) + this.$http.put(Vue.config.amaretti_api+'/task/stop/'+this.task._id) .then(res=>{ this.$notify({ text: res.data.message, type: 'success'}); this.close(); diff --git a/ui/src/modals/instanceselecter.vue b/ui/src/modals/instanceselecter.vue index 4b754d0d..5ab9b8ee 100644 --- a/ui/src/modals/instanceselecter.vue +++ b/ui/src/modals/instanceselecter.vue @@ -128,7 +128,7 @@ export default { console.error("can't find", this.project, "in project list", this.projects); return reject(); } - this.$http.get(Vue.config.wf_api+'/instance', {params: { + this.$http.get(Vue.config.amaretti_api+'/instance', {params: { find: JSON.stringify({ "config.brainlife": true, status: {$ne: "removed"}, diff --git a/ui/src/modals/viewselecter.vue b/ui/src/modals/viewselecter.vue index 03d0140d..854024d5 100644 --- a/ui/src/modals/viewselecter.vue +++ b/ui/src/modals/viewselecter.vue @@ -1,29 +1,25 @@