From 0af4107b910cfc2d1ca8a0d4b112caf22488a3cb Mon Sep 17 00:00:00 2001
From: Dan Levitas <dlevitas@iu.edu>
Date: Fri, 3 Nov 2023 15:34:24 +0000
Subject: [PATCH] code cleanup

---
 ui/src/libUnsafe.ts | 86 ---------------------------------------------
 1 file changed, 86 deletions(-)

diff --git a/ui/src/libUnsafe.ts b/ui/src/libUnsafe.ts
index 214a1919..aaf21498 100755
--- a/ui/src/libUnsafe.ts
+++ b/ui/src/libUnsafe.ts
@@ -450,92 +450,6 @@ export function setRun($root:IEzbids) {
     })
 }
 
-// export function setRun($root:IEzbids) { // REFERENCE
-//     // Set run entity label for all objects, if appropriate.
-//     // Applied on the Dataset Review page.
-
-//     // Loop through subjects
-//     $root._organized.forEach((subGroup:OrganizedSubject) => {
-//         // Loop through sessions
-//         subGroup.sess.forEach((sesGroup:OrganizedSession) => {
-//             sesGroup.objects.forEach((obj:IObject) => {
-
-//                 // leave two entity labels out for now: part and run. The part entity could have a pairing (mag/phase or real/imag), and we're interested in the run entity
-//                 let targetEntities = Object.fromEntries(Object.entries(obj._entities).filter(([key])=>key !== "part" && key !== "run" && key !== "echo"))
-
-//                 let initialGrouping = sesGroup.objects.filter(e=>e._type !== "exclude" &&
-//                     !e._exclude &&
-//                     e._type === obj._type &&
-//                     e._type !== "func/events" && // let users specify the run number for func/events files
-//                     deepEqual(Object.fromEntries(Object.entries(e._entities).filter(([key])=>key !== "part" && key !== "run" && key !== "echo")), targetEntities)
-//                 )
-//                 // console.log(initialGrouping)
-
-//                 if (initialGrouping.length) {
-//                     // Sort this new array by idx (i.e. order in which the sequences were collected in the scanner)
-//                     initialGrouping.sort((a, b) => a.idx - b.idx)
-
-//                     let setRun = false
-//                     if (initialGrouping.length > 1) {
-//                         setRun = true
-//                     // } else if (initialGrouping.length === 1 && (initialGrouping[0]._type.includes("anat") || initialGrouping[0]._type.includes("func"))) { // might need to add conditional for not having func/events
-//                     } else if (initialGrouping.length === 1 && (initialGrouping[0]._type.includes("func"))) { // might need to add conditional for not having func/events
-//                         setRun = true
-//                     }
-
-//                     if (setRun) {
-//                         let run = 1
-//                         initialGrouping.forEach((o:IObject) => {
-//                             if (o._entities.part && ["", "mag", "real"].includes(o._entities.part)) {
-//                                 o._entities.run = run.toString()
-//                                 o.entities.run = o._entities.run
-//                                 run++
-//                             } else if (o._entities.part && !["", "mag", "real"].includes(o._entities.part)) {
-//                                 if (o._entities.part === "phase") {
-//                                     let correspondingFuncMag = initialGrouping.filter(e=>e._entities.part === "mag" &&
-//                                         ((e.idx === o.idx - 1 && e._type === "func/bold") || (e.idx === o.idx - 2 && e._type === "func/bold"))
-//                                     )
-
-//                                     if (!correspondingFuncMag.length) {
-//                                         o._exclude = true
-//                                         o.exclude = true
-//                                         o.validationWarnings = ["There is no corresponding func/bold (part-mag) sequence, therefore this sequence will be excluded from BIDS conversion"]
-//                                     } else {
-//                                         o._entities.run = correspondingFuncMag[0]._entities.run
-//                                         o.entities.run = o._entities.run
-//                                     }
-//                                 } else if (o._entities.part === "imag") {
-//                                     let correspondingFuncReal = initialGrouping.filter(e=>e._entities.part === "real" &&
-//                                         ((e.idx === o.idx - 1 && e._type === "func/bold") || (e.idx === o.idx - 2 && e._type === "func/bold"))
-//                                     )
-
-//                                     if (!correspondingFuncReal.length) {
-//                                         o._exclude = true
-//                                         o.exclude = true
-//                                         o.validationWarnings = ["There is no corresponding func/bold (part-real) sequence, therefore this sequence will be excluded from BIDS conversion"]
-//                                     } else {
-//                                         o._entities.run = correspondingFuncReal[0]._entities.run
-//                                         o.entities.run = o._entities.run
-//                                     }
-//                                 }
-//                             } else {
-//                                 o._entities.run = run.toString()
-//                                 o.entities.run = o._entities.run
-//                                 run++
-//                             }
-//                         })
-//                     } else {
-//                         initialGrouping.forEach((o:IObject) => {
-//                             o._entities.run = ""
-//                             o.entities.run = o._entities.run
-//                         })
-//                     }
-//                 }
-//             })
-//         })
-//     })
-// }
-
 export function setIntendedFor($root:IEzbids) {
     // Apply fmap intendedFor mapping, based on user specifications on Series page.