classicthesis-config.tex

% ****************************************************************************************************
% classicthesis-config.tex 
% formerly known as loadpackages.sty, classicthesis-ldpkg.sty, and classicthesis-preamble.sty 
% Use it at the beginning of your ClassicThesis.tex, or as a LaTeX Preamble 
% in your ClassicThesis.{tex,lyx} with \input{classicthesis-config}
% ****************************************************************************************************  
% If you like the classicthesis, then I would appreciate a postcard. 
% My address can be found in the file ClassicThesis.pdf. A collection 
% of the postcards I received so far is available online at 
% http://postcards.miede.de
% ****************************************************************************************************
% !!! ATTENTION !!! ATTENTION !!! ATTENTION !!! ATTENTION !!!
% This version was modified to comply with the formatting guidelines
% of the Graduate Research School of La Trobe University.
% ~ October 2018 / Matthias Langer (https://github.com/bashimao/ltu-thesis)
% !!! ATTENTION !!! ATTENTION !!! ATTENTION !!! ATTENTION !!!
% ****************************************************************************************************


%Warning  message supression.
\RequirePackage{silence}
\WarningFilter{scrreprt}{Usage of package `titlesec'}
\WarningFilter{tocloft}{tocloft bailing out}
\WarningFilter{titlesec}{Non standard sectioning command}

% ****************************************************************************************************
% 0. Set the encoding of your files. UTF-8 is the only sensible encoding nowadays. If you can't read
% äöüßáéçèê∂åëæƒÏ€ then change the encoding setting in your editor, not the line below. If your editor
% does not support utf8 use another editor!
% ****************************************************************************************************
\PassOptionsToPackage{utf8}{inputenc}
	\usepackage{inputenc}


% ****************************************************************************************************
% 1. Configure classicthesis for your needs here, e.g., remove "drafting" below 
% in order to deactivate the time-stamp on the pages
% ****************************************************************************************************
\PassOptionsToPackage{
  drafting=true,    % print version information on the bottom of the pages
  tocaligned=false, % the left column of the toc will be aligned (no indentation)
  dottedtoc=true,  % page numbers in ToC flushed right
  eulerchapternumbers=true, % use AMS Euler for chapter font (otherwise Palatino)
  linedheaders=false,       % chaper headers will have line above and beneath
  floatperchapter=true,     % numbering per chapter for all floats (i.e., Figure 1.1)
  eulermath=false,  % use awesome Euler fonts for mathematical formulae (only with pdfLaTeX)
  beramono=true,    % toggle a nice monospaced font (w/ bold)
  palatino=true,    % deactivate standard font for loading another one, see the last section at the end of this file for suggestions
  style=classicthesis % classicthesis, arsclassica
}{classicthesis}
% ********************************************************************
% Available options for classicthesis.sty 
% (see ClassicThesis.pdf for more information):
% drafting
% parts nochapters linedheaders
% eulerchapternumbers beramono eulermath pdfspacing minionprospacing
% tocaligned dottedtoc manychapters
% listings floatperchapter subfig
% ********************************************************************


% ****************************************************************************************************
% 2. Personal data and user ad-hoc commands
% ****************************************************************************************************
% moved to thesis.tex


% ********************************************************************
% Setup, finetuning, and useful commands
% ********************************************************************
\newcounter{dummy} % necessary for correct hyperlinks (to index, bib, etc.)
\newlength{\abcd} % for ab..z string length calculation
\providecommand{\mLyX}{L\kern-.1667em\lower.25em\hbox{Y}\kern-.125emX\@}
\newcommand{\ie}{i.\,e.\ }
\newcommand{\Ie}{I.\,e.\ }
\newcommand{\eg}{e.\,g.\ }
\newcommand{\Eg}{E.\,g.\ }
\newcommand{\fig}[1]{{Fig.~\ref{#1}}}
% ****************************************************************************************************


% ****************************************************************************************************
% 3. Loading some handy packages
% ****************************************************************************************************
% ******************************************************************** 
% Packages with options that might require adjustments
% ******************************************************************** 
\PassOptionsToPackage{australian}{babel}
  \usepackage{babel}
\usepackage{lineno}
\usepackage{csquotes}
\PassOptionsToPackage{%
  backend=biber,
%   bibencoding=ascii,
  language=auto,
  bibstyle=ieee, % 	
  citestyle=numeric-comp, % 
  sorting=none,
  url=false,
  maxbibnames=10,backref=true,
  backrefstyle=none,
  citecounter=false, % count times each it cited
  natbib=true,
refsection=chapter
}{biblatex}
\usepackage{biblatex}


% \PassOptionsToPackage{australian}{babel}
%   \usepackage{babel}

% \usepackage{csquotes}
% \PassOptionsToPackage{%
%   backend=bibtex,
%   bibencoding=ascii,
%   language=auto,
%   bibstyle=chem-acs, % 	
%   citestyle=chem-acs, % 
%   sorting=none,
%   maxbibnames=10,
%   natbib=true
% }{biblatex}
%   \usepackage{biblatex}
%\PassOptionsToPackage{fleqn}{amsmath}  %Align equations to the left     % math environments and more by the AMS 
  \usepackage{amsmath,amsfonts}

% ******************************************************************** 
% General useful packages
% ******************************************************************** 
\usepackage{amssymb}
\usepackage{gensymb}
\usepackage{lipsum}
\PassOptionsToPackage{T1}{fontenc} % T2A for cyrillics
    \usepackage{fontenc}
\usepackage{textcomp} % fix warning with missing font shapes
\usepackage{scrhack} % fix warnings when using KOMA with listings package  
\usepackage{xspace} % to get the spacing after macros right
\usepackage{mparhack} % get marginpar right
%\usepackage[latest]{latexrelease} % will be used once available in more distributions (ISSUE #107)

\usepackage{mfirstuc}
\usepackage{acro}[=v2]
\acsetup{ %Capitalise first letter when specified in text
  make-links = true,
  format/list=\ecapitalisewords,
  list / display = used,
     list / heading=none,
   list / template = longtable,
   % patch/longtable=false,
} 
\input{text/acronyms}


\usepackage{afterpage}
% \usepackage{chemmacros}
% \NewChemReaction{multreaction}{multline}
\usepackage[version=4]{mhchem}
  \def\bflabel#1{{\acsfont{#1}\hfill}}
  \def\aclabelfont#1{\acsfont{#1}}
% ****************************************************************************************************


% ****************************************************************************************************
% 4. Setup floats: tables, (sub)figures, and captions
% ****************************************************************************************************
\usepackage{tabularx} % better tables
\setlength{\extrarowheight}{3pt} % increase table row height
\newcommand{\tableheadline}[1]{\multicolumn{1}{c}{\spacedlowsmallcaps{#1}}}
\newcommand{\myfloatalign}{\centering} % to be used with each float for alignment
\usepackage{makecell}
\usepackage{multirow}
\usepackage{caption}
\usepackage{subcaption}
\usepackage{notoccite} %Removes citations from toc
\usepackage{longtable}%
\usepackage{tablefootnote}
\usepackage{comment}
\usepackage{pdflscape}
%\usepackage[dvipsname]{xcolor} %For printing 
\usepackage[svgnames]{xcolor} %For PDF
\usepackage{svg}
\usepackage{colortbl}%
  \newcommand{\myrowcolour}{\rowcolor[gray]{0.925}}
\usepackage{booktabs}

\newcommand{\cheading}[2]{\textcolor{Maroon}{\textbf{#1\hfill #2}}}


% Thanks to cgnieder and Claus Lahiri
% http://tex.stackexchange.com/questions/69349/spacedlowsmallcaps-in-caption-label
% [REMOVED DUE TO OTHER PROBLEMS, SEE ISSUE #82]    
%\DeclareCaptionLabelFormat{smallcaps}{\bothIfFirst{#1}{~}\MakeTextLowercase{\textsc{#2}}}
%\captionsetup{font=small,labelformat=smallcaps} % format=hang,
\captionsetup{font=small} % format=hang,
%\usepackage{subfig} %Possible Errors when using inconjunction with subcaption

\newcommand*{\figureautorefname}{Fig.}
% ****************************************************************************************************

\usepackage{etoolbox}
\makeatletter
% \newif\if@in@acrolist

% \AtBeginEnvironment{acronym}{\@in@acrolisttrue}
% \newrobustcmd{\LU}[2]{\if@in@acrolist#1\else#2\fi}

% \newcommand{\ACF}[1]{{\@in@acrolisttrue\acf{#1}}}
\makeatother

% ****************************************************************************************************
% 5. Setup code listings
% ****************************************************************************************************
\usepackage{listings}
%\lstset{emph={trueIndex,root},emphstyle=\color{BlueViolet}}%\underbar} % For special keywords
\lstset{language=[LaTeX]Tex,%C++,
  morekeywords={PassOptionsToPackage,selectlanguage},
  keywordstyle=\color{RoyalBlue},%\bfseries,
  basicstyle=\small\ttfamily,
  %identifierstyle=\color{NavyBlue},
  commentstyle=\color{Green}\ttfamily,
  stringstyle=\rmfamily,
  numbers=left,
  numberstyle=\scriptsize,%\tiny
  stepnumber=5,
  numbersep=8pt,
  showstringspaces=false,
  breaklines=true,
  %frameround=ftff,
  %frame=single,
  belowcaptionskip=.75\baselineskip
  %frame=L
}
% ****************************************************************************************************             


% ****************************************************************************************************
% 6. PDFLaTeX, hyperreferences and citation backreferences
% ****************************************************************************************************
% ********************************************************************
% Using PDFLaTeX
% ********************************************************************
\PassOptionsToPackage{pdftex,hyperfootnotes=false,pdfpagelabels}{hyperref}
\usepackage{hyperref}  % backref linktocpage pagebackref
\pdfcompresslevel=9
\pdfadjustspacing=1
\PassOptionsToPackage{pdftex}{graphicx}
    \usepackage{graphicx} 


% ********************************************************************
% Hyperreferences
% ********************************************************************
\hypersetup{breaklinks=true}
\hypersetup{linktocpage=true}
\hypersetup{colorlinks=true}
\hypersetup{urlcolor=webbrown}
\hypersetup{linkcolor=RoyalBlue}
\hypersetup{citecolor=webgreen}
\hypersetup{pageanchor=true}
\hypersetup{plainpages=false}
%\hypersetup{bookmarksnumbered=true}
%\hypersetup{bookmarksopen=true}
%\hypersetup{bookmarksopenlevel=true}
%hypertexnames=true, nesting=true, frenchlinks
\hypersetup{pdfstartpage=3}
\hypersetup{pdfstartview=FitV}
\hypersetup{pdfpagemode=UseNone}
\hypersetup{pageanchor=true}
\hypersetup{pdfpagemode=UseOutlines}
\hypersetup{pdftitle={\myTitle}}
\hypersetup{pdfauthor={\textcopyright\ \myFirstName\ \myLastName, \myUni, \myFaculty}}
\hypersetup{pdfsubject={}}
\hypersetup{pdfkeywords={}}
\hypersetup{pdfhighlight=/O}


\usepackage{cleveref}
\usepackage{refcheck}
\norefnames 

\makeatletter
\newcommand{\refcheckize}[1]{%
  \expandafter\let\csname @@\string#1\endcsname#1%
  \expandafter\DeclareRobustCommand\csname relax\string#1\endcsname[1]{%
    \csname @@\string#1\endcsname{##1}\@for\@temp:=##1\do{\wrtusdrf{\@temp}\wrtusdrf{{\@temp}}}}%
  \expandafter\let\expandafter#1\csname relax\string#1\endcsname
}
\newcommand{\refcheckizetwo}[1]{%
  \expandafter\let\csname @@\string#1\endcsname#1%
  \expandafter\DeclareRobustCommand\csname relax\string#1\endcsname[2]{%
    \csname @@\string#1\endcsname{##1}{##2}\wrtusdrf{##1}\wrtusdrf{{##1}}\wrtusdrf{##2}\wrtusdrf{{##2}}}%
  \expandafter\let\expandafter#1\csname relax\string#1\endcsname
}
\makeatother

\refcheckize{\cref}
\refcheckize{\Cref}
\refcheckizetwo{\crefrange}
\refcheckizetwo{\Crefrange}



\crefname{section}{\S}{\S} 
\Crefname{section}{\S}{\S}
\Crefname{equation}{Eq.}{Eqs.}
\Crefname{figure}{Fig.}{Figs.}
\Crefname{tabular}{Tab.}{Tabs.}
%********************************************************
%Removes link color for printing by uncommenting, remember to change xcolor to cmyk for officeworks printing
%********************************************************

% \hypersetup{hidelinks} %Removes link colours?


% ********************************************************************
% Setup autoreferences
% ********************************************************************
% There are some issues regarding autorefnames
% http://www.ureader.de/msg/136221647.aspx
% http://www.tex.ac.uk/cgi-bin/texfaq2html?label=latexwords
% you have to redefine the makros for the 
% language you use, e.g., australian, ngerman
% (as chosen when loading babel/AtBeginDocument)
% ********************************************************************
\makeatletter
\@ifpackageloaded{babel}%
{%
  \addto\extrasaustralian{%
    \renewcommand*{\figureautorefname}{Fig.}%
    \renewcommand*{\equationautorefname}{Eqn.}%
    \renewcommand*{\tableautorefname}{Table}%
    \renewcommand*{\partautorefname}{Part}%
    \renewcommand*{\chapterautorefname}{Chapter}%
    \renewcommand*{\sectionautorefname}{\S}%
    \renewcommand*{\subsectionautorefname}{\S}%
    \renewcommand*{\subsubsectionautorefname}{\S}%
  }%
  \addto\extrasngerman{%
    \renewcommand*{\paragraphautorefname}{Absatz}%
    \renewcommand*{\subparagraphautorefname}{Unterabsatz}%
    \renewcommand*{\footnoteautorefname}{Fu\"snote}%
    \renewcommand*{\FancyVerbLineautorefname}{Zeile}%
    \renewcommand*{\theoremautorefname}{Theorem}%
    \renewcommand*{\appendixautorefname}{Anhang}%
    \renewcommand*{\equationautorefname}{Gleichung}%
    \renewcommand*{\itemautorefname}{Punkt}%
  }%
  % Fix to getting autorefs for subfigures right (thanks to Belinda Vogt for changing the definition)
  \providecommand{\subfigureautorefname}{\figureautorefname}%
}{\relax}
\makeatother


% ****************************************************************************************************
% 7. Last calls before the bar closes
% ****************************************************************************************************
% ********************************************************************
% Development Stuff
% ********************************************************************
%\listfiles
%\PassOptionsToPackage{l2tabu,orthodox,abort}{nag}
%   \usepackage{nag}
%\PassOptionsToPackage{warning, all}{onlyamsmath}
%   \usepackage{onlyamsmath}

% ********************************************************************
% Last, but not least...
% ********************************************************************
\usepackage{classicthesis}
% ****************************************************************************************************


% ****************************************************************************************************
% 8. Further adjustments (experimental)
% ****************************************************************************************************
% ********************************************************************
% Changing the text area
% ********************************************************************
%\linespread{1.05} % a bit more for Palatino
%\areaset[current]{312pt}{761pt} % 686 (factor 2.2) + 33 head + 42 head \the\footskip
%\setlength{\marginparwidth}{7em}%
%\setlength{\marginparsep}{2em}%

% ********************************************************************
% Using different fonts
% ********************************************************************
%\usepackage[oldstylenums]{kpfonts} % oldstyle notextcomp
%\usepackage[osf]{libertine}
%\usepackage[light,condensed,math]{iwona}
%\renewcommand{\sfdefault}{iwona}
%\usepackage{lmodern} % <-- no osf support :-(
%\usepackage{cfr-lm} % 
%\usepackage[urw-garamond]{mathdesign} <-- no osf support :-(
%\usepackage[default,osfigures]{opensans} % scale=0.95 
%\usepackage[sfdefault]{FiraSans}
% ****************************************************************************************************


% ****************************************************************************************************
% 9. LTU Extensions
% ****************************************************************************************************
\usepackage{colortbl}
\usepackage{setspace}
\usepackage{fp}
\usepackage{soul}

\usepackage{textcomp}

\usepackage{pgfplots}
\usepackage{pgfplotstable}
\pgfplotsset{compat=newest}
\usepackage[separate-uncertainty = true,multi-part-units=single]{siunitx}
\DeclareSIUnit\photon{\text{photon}}
\DeclareSIUnit\photons{\text{photons}}
\DeclareSIUnit\sccm{\text{sccm}}
\DeclareSIUnit\torr{\text{Torr}}
\DeclareSIUnit\rpm{\text{RPM}}
\DeclareSIUnit\atoms{\text{atoms}}
\DeclareSIUnit\ppm{\text{ppm}}
\usepackage{threeparttable}
\sisetup{separate-uncertainty}

\usepackage[shortcuts]{extdash}
%\usepackage{epigraph}

\usepackage{tikz-timing}[2011/01/09]
\usetikzlibrary{arrows, backgrounds, patterns, shapes}
\usepackage{arydshln}

\usepackage{algorithm}
\usepackage{algorithmic}
\newcommand{\algorithmautorefname}{Algorithm}

\renewcommand{\lstlistlistingname}{List of Listings}

\DeclareMathOperator*{\argmin}{argmin}
\DeclareMathOperator*{\argmax}{argmax}

\renewcommand{\rmdefault}{pnc}
\renewcommand{\rmdefault}{pplx}

\newcolumntype{L}[1]{>{\raggedright\arraybackslash}m{#1}}
\newcolumntype{C}[1]{>{\centering\arraybackslash}m{#1}}
\newcolumntype{R}[1]{>{\raggedleft\arraybackslash}m{#1}}

\numberwithin{equation}{chapter}
\numberwithin{figure}{chapter}
\numberwithin{table}{chapter}
\numberwithin{algorithm}{chapter}
\sloppy

\renewcommand{\bibfont}{\footnotesize}

\newcommand{\hinttext}[1]{\textcolor{Gray!70!Red}{#1}}





\renewcommand{\topfraction}{.8}
\renewcommand{\floatpagefraction}{.8}% %reduces the odd a float gets its own page unless it takes up 80% of space

\hyphenation{Vertical}