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@gibsramen gibsramen commented Dec 14, 2022

Modifies main Joint-RPCA code slightly to now save a mapping of which feature is from which modality (table). Adds some code to create a simple network using NetworkX.

@cameronmartino What do you think of the proposed changes to the main Joint-RPCA code?

TODO:

  • Add QIIME2 support
  • Discuss user-input of table names
  • Handling for duplicate IDs (i.e. same feature name in multiple tables)
  • Plotting options
  • Update tests
  • New tests
  • Documentation updates/additions

image

Eventually I think it would really cool to have an interactive 3D network using something like Plotly but that's a whole new project.

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