Test Package #58
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| name: Test Package | |
| on: | |
| schedule: | |
| # run every Wednesday at 17:00 UTC | |
| - cron: "0 17 * * 3" | |
| push: | |
| branches: [main, dev] | |
| pull_request: | |
| branches: [main] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| include: | |
| - os: ubuntu-24.04 | |
| python: "3.12" | |
| name: Python ${{ matrix.python }} | |
| env: | |
| OS: ${{ matrix.os }} | |
| PYTHON: ${{ matrix.python }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.pythonLocation }} | |
| key: ${{ env.pythonLocation }}-${{ hashFiles('pyproject.toml') }} | |
| - name: Install the latest version of uv | |
| uses: astral-sh/setup-uv@v6 | |
| with: | |
| version: "latest" | |
| - name: Install dependencies | |
| run: | | |
| uv sync | |
| - name: Lint with ruff | |
| run: | | |
| uv run ruff check --fix --exit-non-zero-on-fix src | |
| - name: Format with ruff | |
| run: | | |
| uv run ruff format --check src | |
| - name: Test with pytest | |
| run: | | |
| uv run pytest --cov=biocontext_kb --cov-report=term-missing --maxfail=5 -m "not no_ci" | |
| uv run coverage xml | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} |