Error in if (mean(X == 0, na.rm = TRUE) > 0.5) X <- Matrix::Matrix(X, : missing value where TRUE/FALSE needed

[TENandBIO]

Hi,

i am using plaid to calculate signature scores on a personal dataset. I prepared my single cell dataset and the geneset object as you suggested. Then I ran these commands:

gsetX <- plaid(files_bian_all_dgM, matG, normalize=TRUE) ###<- corrected results
gsetX_sing = replaid.sing(files_bian_all_dgM, matG) ###<- corrected results
gsetX_scse <- replaid.scse(files_bian_all_dgM, matG) ###<- corrected results
gsetX_ssgsea <- replaid.ssgsea(files_bian_all_dgM, matG) ###<- corrected results
gsetX_gsva <- replaid.gsva(files_bian_all_dgM, matG) ###<- corrected results

gsetX_ucell <- replaid.ucell(files_bian_all_dgM, matG)
Error in if (mean(X == 0, na.rm = TRUE) > 0.5) X <- Matrix::Matrix(X, :
missing value where TRUE/FALSE needed
gsetX_aucell <- replaid.aucell(files_bian_all_dgM, matG)
Error in if (mean(X == 0, na.rm = TRUE) > 0.5) X <- Matrix::Matrix(X, :
missing value where TRUE/FALSE needed

However, if I run AUCell on the same dataset I got results.
I have tried on dataset you provided and I had no errors.
Can you help me?

Thank you in advance
Tommaso