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| 1 | +# Educational Tutorials |
| 2 | + |
| 3 | +A comprehensive collection of quantum chemistry and computational chemistry tutorials from the Batista Group, covering various computational methods, molecular simulations, and software tools. |
| 4 | + |
| 5 | +## Molecular Simulation and Dynamics |
| 6 | + |
| 7 | +### Interfacial Electron Transfer |
| 8 | +- **[Hands on Simulations of Interfacial Electron Transfer](https://files.batistalab.com/teaching/tutorials/iet_pchem_version2.pdf)** - Practical guide to simulating electron transfer at interfaces |
| 9 | +- **[Aligning Fermi Levels](https://files.batistalab.com/teaching/tutorials/iet_EF.pdf)** - Supplementary tutorial on Fermi level alignment for interfacial systems |
| 10 | + |
| 11 | +### Quantum Dynamics |
| 12 | +- **[Quantum Dynamics](https://files.batistalab.com/teaching/tutorials/QuantumDynamics.pdf)** - Introduction to quantum dynamical simulations |
| 13 | +- **[Time-Sliced Thawed Gaussian Propagation for Simulations of Quantum Dynamics](http://www.birs.ca/events/2016/5-day-workshops/16w5006/videos/watch/201601281933-Batista.html)** - Video lecture on advanced quantum dynamics methods |
| 14 | + |
| 15 | +## Computational Methods and Theory |
| 16 | + |
| 17 | +### Redox Chemistry |
| 18 | +- **[Tutorial on Ab Initio Redox Potential Calculations](https://files.batistalab.com/teaching/tutorials/redoxpotentials.pdf)** - Guide for calculating redox potentials from first principles |
| 19 | + |
| 20 | +### Molecular Design |
| 21 | +- **[Inverse Molecular Design](http://192.132.64.115/imdDocument/index.html)** - Tool and tutorial for inverse molecular design approaches |
| 22 | + |
| 23 | +### QM/MM Methods |
| 24 | +- **[Mod-QM/MM method](http://gascon.chem.uconn.edu/software)** - Information on modified QM/MM methodology |
| 25 | + |
| 26 | +## Software-Specific Tutorials |
| 27 | + |
| 28 | +### DFTB Methods |
| 29 | +- **[DFTB with DFTB+ or Gaussian](https://files.batistalab.com/teaching/tutorials/dftb/DFTB_forBatistaLab_Jan3_2017_withG09.pdf)** - Density functional tight-binding tutorial |
| 30 | + - **Resources:** |
| 31 | + - [DFTBscriptfiles_noexecutable.zip](https://files.batistalab.com/teaching/tutorials/dftb/DFTBscriptfiles_noexecutable.zip) |
| 32 | + - [alanine_dftb_lufeng.com](https://files.batistalab.com/teaching/tutorials/dftb/alanine_dftb_lufeng.com) |
| 33 | + |
| 34 | +### Gaussian 09 |
| 35 | +- **[Quick Tutorial on Natural Bond Order 3 Calculations Within Gaussian 09](https://files.batistalab.com/teaching/tutorials/nbo/Tutorial_NBO.pdf)** - NBO analysis in Gaussian |
| 36 | + - **Resources:** |
| 37 | + - [allBonds.gjf](https://files.batistalab.com/teaching/tutorials/nbo/allBonds.gjf) |
| 38 | + |
| 39 | +- **[Advice on Effective Core Potential (ECP) Basis Sets](https://files.batistalab.com/teaching/tutorials/gaussian/ECP_bases.pdf)** - Guide for selecting appropriate ECP basis sets |
| 40 | + |
| 41 | +### EXAFS Spectroscopy |
| 42 | +- **[Tutorial on Simulating EXAFS Using Demeter](https://files.batistalab.com/teaching/tutorials/exafs/tutorialEXAFS_Oct2016.pdf)** - Extended X-ray absorption fine structure simulations |
| 43 | + - **Resources:** |
| 44 | + - [Build_EXAFS_Oct2016.tar.gz](https://files.batistalab.com/teaching/tutorials/exafs/Build_EXAFS_Oct2016.tar.gz) |
| 45 | + |
| 46 | +### Transport and Advanced Methods |
| 47 | +- **[Non-equilibrium Green's Function Calculations with TranSIESTA](https://files.batistalab.com/teaching/tutorials/NEGF_TranSIESTA/TranSIESTA_tutorial1.3.pdf)** - Electronic transport calculations |
| 48 | + - **Resources:** |
| 49 | + - [Benzenedithiol.mol2](https://files.batistalab.com/teaching/tutorials/NEGF_TranSIESTA/Benzenedithiol.mol2) |
| 50 | + - [Au67.mol2](https://files.batistalab.com/teaching/tutorials/NEGF_TranSIESTA/Au67.mol2) |
| 51 | + - [Utils.zip](https://files.batistalab.com/teaching/tutorials/NEGF_TranSIESTA/Utils.zip) |
| 52 | + |
| 53 | +### Electron Transfer Theory |
| 54 | +- **[Marcus Theory with Gaussian and ADF](https://files.batistalab.com/teaching/tutorials/Marcus/MarcusTheory_tutorial_5.pdf)** - Classical electron transfer theory calculations |
| 55 | + - **Resources:** |
| 56 | + - [MarcusFiles.zip](https://files.batistalab.com/teaching/tutorials/Marcus/MarcusFiles.zip) |
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