diff --git a/configfile_BiasCorrection_CoverageBias b/configfile_BiasCorrection_CoverageBias index 2977fef..6e664ab 100644 --- a/configfile_BiasCorrection_CoverageBias +++ b/configfile_BiasCorrection_CoverageBias @@ -28,6 +28,19 @@ Matrix= ##============ Bed= +##============ +## option 4: If HiChIP data is provided in .hic format +## Make sure that the .hic file contains the target resolution which is provided in the BINSIZE parameter (below) +##============ +HIC= + +##============ +## option 5: If HiChIP data is provided in .cool / .mcool format +## Make sure that the .cool or .mcool file contains the target resolution which is provided in the BINSIZE parameter (below) +##============ +COOL= + + ##******** ## File containing chromomosome size information corresponding to the reference genome. ##******** diff --git a/configfile_BiasCorrection_ICEBias b/configfile_BiasCorrection_ICEBias index 0ef32f5..1315b55 100644 --- a/configfile_BiasCorrection_ICEBias +++ b/configfile_BiasCorrection_ICEBias @@ -28,6 +28,19 @@ Matrix= ##============ Bed= +##============ +## option 4: If HiChIP data is provided in .hic format +## Make sure that the .hic file contains the target resolution which is provided in the BINSIZE parameter (below) +##============ +HIC= + +##============ +## option 5: If HiChIP data is provided in .cool / .mcool format +## Make sure that the .cool or .mcool file contains the target resolution which is provided in the BINSIZE parameter (below) +##============ +COOL= + + ##******** ## File containing chromomosome size information corresponding to the reference genome. ##******** diff --git a/configfile_P2P_BiasCorrection_CoverageBias b/configfile_P2P_BiasCorrection_CoverageBias index 00bdd60..2f146e8 100644 --- a/configfile_P2P_BiasCorrection_CoverageBias +++ b/configfile_P2P_BiasCorrection_CoverageBias @@ -28,6 +28,19 @@ Matrix= ##============ Bed= +##============ +## option 4: If HiChIP data is provided in .hic format +## Make sure that the .hic file contains the target resolution which is provided in the BINSIZE parameter (below) +##============ +HIC= + +##============ +## option 5: If HiChIP data is provided in .cool / .mcool format +## Make sure that the .cool or .mcool file contains the target resolution which is provided in the BINSIZE parameter (below) +##============ +COOL= + + ##******** ## File containing chromomosome size information corresponding to the reference genome. ##******** diff --git a/configfile_P2P_BiasCorrection_ICEBias b/configfile_P2P_BiasCorrection_ICEBias index 9732e5f..93378e3 100644 --- a/configfile_P2P_BiasCorrection_ICEBias +++ b/configfile_P2P_BiasCorrection_ICEBias @@ -28,6 +28,19 @@ Matrix= ##============ Bed= +##============ +## option 4: If HiChIP data is provided in .hic format +## Make sure that the .hic file contains the target resolution which is provided in the BINSIZE parameter (below) +##============ +HIC= + +##============ +## option 5: If HiChIP data is provided in .cool / .mcool format +## Make sure that the .cool or .mcool file contains the target resolution which is provided in the BINSIZE parameter (below) +##============ +COOL= + + ##******** ## File containing chromomosome size information corresponding to the reference genome. ##********