diff --git a/_episodes/11-SecretionPrediction.md b/_episodes/11-SecretionPrediction.md index a188379..8f805c5 100644 --- a/_episodes/11-SecretionPrediction.md +++ b/_episodes/11-SecretionPrediction.md @@ -44,13 +44,13 @@ Then, lets run signalP on the *E.coli* proteins ~~~ $ cd ~/Secretome_prediction/prediction -$ signalp -t gram- -m Ecoli.fasta ~/Secretome_prediction/annotation/ERR022075/ERR022075.faa +$ signalp -t gram- -m Ecoli_secreted.fasta ~/Secretome_prediction/annotation/ERR022075/ERR022075.faa ~~~ {: .bash} > ## Exercise > -> Can you find proteins with a signal peptide in the *S.aureus* genome? +> Generate a list of proteins with a signal peptide from the *S.aureus* genome. > > >> ## Solution @@ -59,7 +59,7 @@ $ signalp -t gram- -m Ecoli.fasta ~/Secretome_prediction/annotation/ERR022075/E >> >> ~~~ >> $ cd ~/Secretome_prediction/prediction ->> $ signalp -t gram+ -m Saureus.fasta ~/Secretome_prediction/annotation/S_aureus/S_aureus.faa +>> $ signalp -t gram+ -m Saureus_secreted.fasta ~/Secretome_prediction/annotation/S_aureus/S_aureus.faa >> ~~~ >> {: .bash} >> {: .output}