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index.crossalign_obe.html
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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<meta http-equiv="content-type" content="text/html;charset=utf-8" />
<title>{{title}}</title>
<link rel="stylesheet" href="gtt_lab_styles.css" type="text/css" media="all" charset="utf-8">
<link rel="stylesheet" href="style.css" type="text/css" media="all">
<link rel="stylesheet" href="http://service.tartaglialab.com/static_files/styles/jRating.jquery.css" type="text/css" media="all">
<link rel="stylesheet" href="colorbox.css">
<style>
label {
display: inline-block;
width: 5em;
}
</style>
</head>
<body>
<script src="//ajax.googleapis.com/ajax/libs/jquery/1.8.0/jquery.min.js" type="text/javascript"></script>
<!-- security start -->
<script language="javascript" type="text/javascript" src="http://service.tartaglialab.com/static_files/js/md5-min.js"></script>
<script language="javascript" type="text/javascript" src="http://service.tartaglialab.com/static_files/js/parseuri.js"></script>
<script type="text/javascript" src="http://service.tartaglialab.com/static_files/js/jquery-1.11.0.js"></script>
<script language="javascript" type="text/javascript" src="http://service.tartaglialab.com/static_files/js/jRating.jquery.js"></script>
<script language="javascript" type="text/javascript" src="http://service.tartaglialab.com/static_files/js/jquery.flot.js"></script>
<script language="javascript" type="text/javascript" src="http://service.tartaglialab.com/static_files/js/jquery.flot.axislabels.js"></script>
<script language="javascript" type="text/javascript" src="http://service.tartaglialab.com/static_files/js/jquery.metadata.js"></script>
<script src="http://service.tartaglialab.com/static_files/js/jquery.tablesorter.js" type="text/javascript"></script>
<style type="text/css">
body {
/*hide main content */
display:none;
}
</style>
<script type="text/javascript" charset="utf-8">
// get pathname
var pathname = String(window.location.pathname.split("/").slice(0, -1).join("/"))
var fullurl = String(window.location)
var passKey = String(parseUri(fullurl).queryKey["unlock"].slice(0, 10))
try {
if (parseUri(fullurl).queryKey["unlock"].slice(0, 10) == hex_md5(pathname).slice(0, 10)) {
$().ready(function() {
$("body").show()
$("body").css("display", "block");
})
} else {
$().ready(function() {
$("body").empty()
$("body").show()
$("body").html("Unauthorised access - please contact administrator with current URL to restore access to the submission")
})
}
} catch (err) {
$().ready(function() {
$("body").empty()
$("body").show()
$("body").html("Unauthorised access - please contact administrator with current URL to restore access to the submission")
})
}
</script>
<!-- security end -->
<script>
$(document).ready(function(){
$('#table').tablesorter({
widgets: ['zebra'],
widgetZebra: {css: ["NormRow","AltRow"]} // css classes to apply to rows
});
});
</script>
<div id="topbar">
<div id="home_panel">
<p><a href="http://service.tartaglialab.com/">Portal Home</a></p>
</div>
<div id="title_server">
<h1>CROSSalign</h1>
</div>
<div id="navbar_server">
<h3>[
<a target="" href="http://service.tartaglialab.com/new_submission/crossalign">CROSSalign Home</a>
-
<a target="" href="http://service.tartaglialab.com/static_files/algorithms/crossalign/tutorial.html ">Tutorial</a>
-
<a target="" href="http://pasteur.crg.es/portal/page/portal/827A462EAB6802B3E04012AC0E01291B">Group page @ CRG</a>
]</h3>
</div>
</div>
<div id="welcome_server">
<div>
<h2>Your submission results</h2><br />
<span id="submission_info">
<h4>Information about the JOB:</h4>
<p>
ID: {{randoms}}<br />
User label: {{title}}<br />
Input RNA 1: <a href="rna.fasta">FASTA file</a>, <a href="table1.txt">CROSS profile </a><br />
Input RNA 2: <a href="rna2.fasta">FASTA file</a>, <a href="table2.txt">CROSS profile </a><br />
Feature: {{feature}}<br />
Generated: {{generated}}<br /><br />
</p>
</span>
<br />
<!--
<br>
<div align="left">
<a href="profile.txt"><img height=30 width=30 src="pi.gif"> Download the profile(s) </a>
</div>
-->
<br />
<!--
<h2 align="center"> The normalized structural distance is
<?php
$myfilename = "outputs/score.txt";
echo file_get_contents($myfilename);
?>
<br />
</h2>
-->
<h2 align="center"> The normalized structural distance between the secondary structure profiles is: <b>{{value}}</b> (p-value = {{pvalue}})</br></p></h2>
</br></p>
<br />
<br>
<h2 align="center"> The aligned region in the longer profile is: [<b>{{start}}</b>- <b>{{end}}</b>] nucleotides</br></p></h2>
</br></p>
<br />
<br>
<div align="center">
<a href="plot2.png"><img src="plot2.png" height="580" width="580"></a>
</div>
<br>
<div align="left">
<a href="aligned.profiles.txt"><img height=30 width=30 src="tab.gif"> Download the complete aligned table </a>
<br>
<br />
<div style="height:500px; overflow:auto;">
<!--<div style="float:left;width:940px;">-->
<table cellpadding="0" cellspacing="0" border="0" id="table" class="tablesorter">
<thead>
<tr>
<th class="nosort"><p align="center" color="firebrick">Position RNA1</p></th>
<th class="nosort"><p align="center" color="firebrick">Score</p></th>
<th class="nosort"><p align="center" color="firebrick">Position RNA2</p></th>
<th class="nosort"><p align="center" color="firebrick">Score</p></th>
</tr>
</thead>
<script type="text/javascript">
var ajaxRq = window.XMLHttpRequest ? new XMLHttpRequest() : new ActiveXObject("Msxml2.XMLHTTP");
ajaxRq.open("GET", "table.html", false);
ajaxRq.send(null);
document.write(ajaxRq.responseText);
</script>
</table>
<!-- table sorter -->
<script type="text/javascript" src="http://service.tartaglialab.com/static_files/js/jquery.tablesorter.js"></script>
<script>
$(document).ready(function()
{
$("#myTable").tablesorter();
}
);
</script>
<!--</div>-->
<div style="clear:both;">
<br>
</div>
</div>
<!--
<div align="left">
<a href="table.txt"><img height=30 width=30 src="tab.gif"> Download the complete set of data </a>
<br>
<br />
<div style="height:500px; overflow:auto;">
<!~~<div style="float:left;width:940px;">~~>
<table cellpadding="0" cellspacing="0" border="0" id="table" class="tablesorter">
<thead>
<tr>
<th class="nosort"><p align="center" color="firebrick">Position</p></th>
<th class="nosort"><p align="center" color="firebrick">Nucleotide</p></th>
<th class="nosort"><p align="center" color="firebrick">Propensity Score</p></th>
<th class="nosort"><p align="center" color="firebrick">Smoothed Score</p></th>
</tr>
</thead>
<script type="text/javascript">
var ajaxRq = window.XMLHttpRequest ? new XMLHttpRequest() : new ActiveXObject("Msxml2.XMLHTTP");
ajaxRq.open("GET", "table.html", false);
ajaxRq.send(null);
document.write(ajaxRq.responseText);
</script>
</table>
<!~~ table sorter ~~>
<script type="text/javascript" src="http://service.tartaglialab.com/static_files/js/jquery.tablesorter.js"></script>
<script>
$(document).ready(function()
{
$("#myTable").tablesorter();
}
);
</script>
<!~~</div>~~>
-->
<div style="clear:both;">
<br>
</div>
</div>
<div id="footer_main">
<hr>
<p>© 2015 - <a href="http://big.crg.cat/gene_function_and_evolution" target="_blank">Gene Function and Evolution</a> - <a href="http://www.crg.eu" target="_blank">Center for Genomic Regulation (CRG)</a></p>
</div>
</div>
</div>
</body>
</html>