environment_setup.ipynb

{
 "cells": [
  {
   "cell_type": "markdown",
   "id": "804fc47a",
   "metadata": {},
   "source": [
    "# Environment Setup"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "9cba3227",
   "metadata": {},
   "source": [
    "## Check Python version\n",
    "\n",
    "Ideally version 3.7, 3.8, or 3.9."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 7,
   "id": "5c5e467f",
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Python 3.8.5\r\n"
     ]
    }
   ],
   "source": [
    "!python --version"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "0af791bf",
   "metadata": {},
   "source": [
    "## Install dependencies"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 8,
   "id": "7b4f3cb8",
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Defaulting to user installation because normal site-packages is not writeable\n",
      "Requirement already satisfied: radcad==0.8.4 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from -r requirements.txt (line 1)) (0.8.4)\n",
      "Requirement already satisfied: pytest==6.2.2 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from -r requirements.txt (line 2)) (6.2.2)\n",
      "Requirement already satisfied: ipykernel==5.5.3 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from -r requirements.txt (line 3)) (5.5.3)\n",
      "Requirement already satisfied: matplotlib==3.3.4 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from -r requirements.txt (line 4)) (3.3.4)\n",
      "Requirement already satisfied: plotly==4.14.3 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from -r requirements.txt (line 5)) (4.14.3)\n",
      "Requirement already satisfied: stochastic==0.6.0 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from -r requirements.txt (line 6)) (0.6.0)\n",
      "Requirement already satisfied: typing_extensions==3.7.4.3 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from -r requirements.txt (line 7)) (3.7.4.3)\n",
      "Requirement already satisfied: black==20.8b1 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from -r requirements.txt (line 8)) (20.8b1)\n",
      "Requirement already satisfied: ipython-autotime==0.3.1 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from -r requirements.txt (line 9)) (0.3.1)\n",
      "Requirement already satisfied: jupyter-dash==0.4.0 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from -r requirements.txt (line 10)) (0.4.0)\n",
      "Requirement already satisfied: jupyter-client==6.1.2 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from -r requirements.txt (line 11)) (6.1.2)\n",
      "Requirement already satisfied: jupyterlab==3.0.17 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from -r requirements.txt (line 12)) (3.0.17)\n",
      "Requirement already satisfied: ipywidgets==7.6.3 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from -r requirements.txt (line 13)) (7.6.3)\n",
      "Requirement already satisfied: notebook==6.4.1 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from -r requirements.txt (line 14)) (6.4.1)\n",
      "Requirement already satisfied: pdoc3==0.9.2 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from -r requirements.txt (line 15)) (0.9.2)\n",
      "Requirement already satisfied: jupyter-book==0.11.1 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from -r requirements.txt (line 16)) (0.11.1)\n",
      "Requirement already satisfied: psutil==5.8.0 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from -r requirements.txt (line 17)) (5.8.0)\n",
      "Requirement already satisfied: kaleido==0.2.1 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from -r requirements.txt (line 18)) (0.2.1)\n",
      "Requirement already satisfied: nbconvert==5.6.1 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from -r requirements.txt (line 19)) (5.6.1)\n",
      "Requirement already satisfied: flask==2.0.0 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from -r requirements.txt (line 20)) (2.0.0)\n",
      "Requirement already satisfied: gunicorn==20.1.0 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from -r requirements.txt (line 21)) (20.1.0)\n",
      "Requirement already satisfied: cadCAD_tools==0.0.1.4 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from -r requirements.txt (line 22)) (0.0.1.4)\n",
      "Requirement already satisfied: tqdm==4.61.0 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from -r requirements.txt (line 23)) (4.61.0)\n",
      "Requirement already satisfied: diskcache==5.2.1 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from -r requirements.txt (line 24)) (5.2.1)\n",
      "Requirement already satisfied: pylint==2.8.3 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from -r requirements.txt (line 25)) (2.8.3)\n",
      "Requirement already satisfied: python-dotenv==0.19.0 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from -r requirements.txt (line 26)) (0.19.0)\n",
      "Requirement already satisfied: jupyterlab-spellchecker==0.6.0 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from -r requirements.txt (line 27)) (0.6.0)\n",
      "Requirement already satisfied: pathos<0.3.0,>=0.2.7 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from radcad==0.8.4->-r requirements.txt (line 1)) (0.2.8)\n",
      "Requirement already satisfied: pandas<2.0.0,>=1.0.0 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from radcad==0.8.4->-r requirements.txt (line 1)) (1.2.3)\n",
      "Requirement already satisfied: pluggy<1.0.0a1,>=0.12 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from pytest==6.2.2->-r requirements.txt (line 2)) (0.13.1)\n",
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      "Requirement already satisfied: traitlets>=4.1.0 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from ipykernel==5.5.3->-r requirements.txt (line 3)) (5.0.5)\n",
      "Requirement already satisfied: ipython>=5.0.0 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from ipykernel==5.5.3->-r requirements.txt (line 3)) (7.26.0)\n",
      "Requirement already satisfied: python-dateutil>=2.1 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from matplotlib==3.3.4->-r requirements.txt (line 4)) (2.8.2)\n",
      "Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.3 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from matplotlib==3.3.4->-r requirements.txt (line 4)) (2.4.7)\n",
      "Requirement already satisfied: cycler>=0.10 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from matplotlib==3.3.4->-r requirements.txt (line 4)) (0.10.0)\n",
      "Requirement already satisfied: kiwisolver>=1.0.1 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from matplotlib==3.3.4->-r requirements.txt (line 4)) (1.3.1)\n",
      "Requirement already satisfied: pillow>=6.2.0 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from matplotlib==3.3.4->-r requirements.txt (line 4)) (8.3.1)\n",
      "Requirement already satisfied: numpy>=1.15 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from matplotlib==3.3.4->-r requirements.txt (line 4)) (1.20.2)\n",
      "Requirement already satisfied: six in /Users/rosseyre/.Trash/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/site-packages (from plotly==4.14.3->-r requirements.txt (line 5)) (1.15.0)\n",
      "Requirement already satisfied: retrying>=1.3.3 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from plotly==4.14.3->-r requirements.txt (line 5)) (1.3.3)\n",
      "Requirement already satisfied: scipy<2.0,>=1.3 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from stochastic==0.6.0->-r requirements.txt (line 6)) (1.7.1)\n",
      "Requirement already satisfied: appdirs in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from black==20.8b1->-r requirements.txt (line 8)) (1.4.4)\n",
      "Requirement already satisfied: pathspec<1,>=0.6 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from black==20.8b1->-r requirements.txt (line 8)) (0.9.0)\n",
      "Requirement already satisfied: mypy-extensions>=0.4.3 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from black==20.8b1->-r requirements.txt (line 8)) (0.4.3)\n",
      "Requirement already satisfied: typed-ast>=1.4.0 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from black==20.8b1->-r requirements.txt (line 8)) (1.4.3)\n",
      "Requirement already satisfied: click>=7.1.2 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from black==20.8b1->-r requirements.txt (line 8)) (7.1.2)\n",
      "Requirement already satisfied: regex>=2020.1.8 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from black==20.8b1->-r requirements.txt (line 8)) (2021.7.6)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Requirement already satisfied: requests in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from jupyter-dash==0.4.0->-r requirements.txt (line 10)) (2.26.0)\n",
      "Requirement already satisfied: ansi2html in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from jupyter-dash==0.4.0->-r requirements.txt (line 10)) (1.6.0)\n",
      "Requirement already satisfied: dash in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from jupyter-dash==0.4.0->-r requirements.txt (line 10)) (1.21.0)\n",
      "Requirement already satisfied: pyzmq>=13 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from jupyter-client==6.1.2->-r requirements.txt (line 11)) (22.1.0)\n",
      "Requirement already satisfied: jupyter-core>=4.6.0 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from jupyter-client==6.1.2->-r requirements.txt (line 11)) (4.7.1)\n",
      "Requirement already satisfied: jinja2>=2.1 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from jupyterlab==3.0.17->-r requirements.txt (line 12)) (3.0.1)\n",
      "Requirement already satisfied: jupyterlab-server~=2.3 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from jupyterlab==3.0.17->-r requirements.txt (line 12)) (2.6.1)\n",
      "Requirement already satisfied: nbclassic~=0.2 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from jupyterlab==3.0.17->-r requirements.txt (line 12)) (0.3.1)\n",
      "Requirement already satisfied: jupyter-server~=1.4 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from jupyterlab==3.0.17->-r requirements.txt (line 12)) (1.10.2)\n",
      "Requirement already satisfied: widgetsnbextension~=3.5.0 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from ipywidgets==7.6.3->-r requirements.txt (line 13)) (3.5.1)\n",
      "Requirement already satisfied: nbformat>=4.2.0 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from ipywidgets==7.6.3->-r requirements.txt (line 13)) (5.1.3)\n",
      "Requirement already satisfied: jupyterlab-widgets>=1.0.0 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from ipywidgets==7.6.3->-r requirements.txt (line 13)) (1.0.0)\n",
      "Requirement already satisfied: prometheus-client in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from notebook==6.4.1->-r requirements.txt (line 14)) (0.11.0)\n",
      "Requirement already satisfied: argon2-cffi in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from notebook==6.4.1->-r requirements.txt (line 14)) (20.1.0)\n",
      "Requirement already satisfied: Send2Trash>=1.5.0 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from notebook==6.4.1->-r requirements.txt (line 14)) (1.7.1)\n",
      "Requirement already satisfied: terminado>=0.8.3 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from notebook==6.4.1->-r requirements.txt (line 14)) (0.10.1)\n",
      "Requirement already satisfied: ipython-genutils in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from notebook==6.4.1->-r requirements.txt (line 14)) (0.2.0)\n",
      "Requirement already satisfied: mako in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from pdoc3==0.9.2->-r requirements.txt (line 15)) (1.1.4)\n",
      "Requirement already satisfied: markdown>=3.0 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from pdoc3==0.9.2->-r requirements.txt (line 15)) (3.3.4)\n",
      "Requirement already satisfied: jsonschema in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from jupyter-book==0.11.1->-r requirements.txt (line 16)) (3.2.0)\n",
      "Requirement already satisfied: sphinx-copybutton in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from jupyter-book==0.11.1->-r requirements.txt (line 16)) (0.4.0)\n",
      "Requirement already satisfied: sphinx-comments in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from jupyter-book==0.11.1->-r requirements.txt (line 16)) (0.0.3)\n",
      "Requirement already satisfied: sphinx-panels~=0.5.2 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from jupyter-book==0.11.1->-r requirements.txt (line 16)) (0.5.2)\n",
      "Requirement already satisfied: sphinx-external-toc~=0.2.0 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from jupyter-book==0.11.1->-r requirements.txt (line 16)) (0.2.3)\n",
      "Requirement already satisfied: linkify-it-py~=1.0.1 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from jupyter-book==0.11.1->-r requirements.txt (line 16)) (1.0.1)\n",
      "Requirement already satisfied: jupytext<1.11,>=1.8 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from jupyter-book==0.11.1->-r requirements.txt (line 16)) (1.10.3)\n",
      "Requirement already satisfied: jupyterbook-latex~=0.3.1 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from jupyter-book==0.11.1->-r requirements.txt (line 16)) (0.3.1)\n",
      "Requirement already satisfied: pyyaml in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from jupyter-book==0.11.1->-r requirements.txt (line 16)) (5.4.1)\n",
      "Requirement already satisfied: sphinxcontrib-bibtex~=2.2.0 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from jupyter-book==0.11.1->-r requirements.txt (line 16)) (2.2.1)\n",
      "Requirement already satisfied: sphinx-togglebutton in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from jupyter-book==0.11.1->-r requirements.txt (line 16)) (0.2.3)\n",
      "Requirement already satisfied: sphinx-thebe~=0.0.8 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from jupyter-book==0.11.1->-r requirements.txt (line 16)) (0.0.8)\n",
      "Requirement already satisfied: docutils<0.17,>=0.15 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from jupyter-book==0.11.1->-r requirements.txt (line 16)) (0.16)\n",
      "Requirement already satisfied: myst-nb~=0.12.0 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from jupyter-book==0.11.1->-r requirements.txt (line 16)) (0.12.3)\n",
      "Requirement already satisfied: sphinx<4,>=2 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from jupyter-book==0.11.1->-r requirements.txt (line 16)) (3.5.4)\n",
      "Requirement already satisfied: sphinx-book-theme~=0.1.0 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from jupyter-book==0.11.1->-r requirements.txt (line 16)) (0.1.1)\n",
      "Requirement already satisfied: bleach in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from nbconvert==5.6.1->-r requirements.txt (line 19)) (3.3.1)\n",
      "Requirement already satisfied: testpath in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from nbconvert==5.6.1->-r requirements.txt (line 19)) (0.5.0)\n",
      "Requirement already satisfied: pandocfilters>=1.4.1 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from nbconvert==5.6.1->-r requirements.txt (line 19)) (1.4.3)\n",
      "Requirement already satisfied: pygments in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from nbconvert==5.6.1->-r requirements.txt (line 19)) (2.9.0)\n",
      "Requirement already satisfied: mistune<2,>=0.8.1 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from nbconvert==5.6.1->-r requirements.txt (line 19)) (0.8.4)\n",
      "Requirement already satisfied: entrypoints>=0.2.2 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from nbconvert==5.6.1->-r requirements.txt (line 19)) (0.3)\n",
      "Requirement already satisfied: defusedxml in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from nbconvert==5.6.1->-r requirements.txt (line 19)) (0.7.1)\n",
      "Requirement already satisfied: Werkzeug>=2.0 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from flask==2.0.0->-r requirements.txt (line 20)) (2.0.1)\n",
      "Requirement already satisfied: itsdangerous>=2.0 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from flask==2.0.0->-r requirements.txt (line 20)) (2.0.1)\n",
      "Requirement already satisfied: setuptools>=3.0 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from gunicorn==20.1.0->-r requirements.txt (line 21)) (57.4.0)\n",
      "Requirement already satisfied: cadCAD in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from cadCAD_tools==0.0.1.4->-r requirements.txt (line 22)) (0.4.23)\n",
      "Requirement already satisfied: astroid==2.5.6 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from pylint==2.8.3->-r requirements.txt (line 25)) (2.5.6)\n",
      "Requirement already satisfied: mccabe<0.7,>=0.6 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from pylint==2.8.3->-r requirements.txt (line 25)) (0.6.1)\n",
      "Requirement already satisfied: isort<6,>=4.2.5 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from pylint==2.8.3->-r requirements.txt (line 25)) (5.9.3)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Requirement already satisfied: babel in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from jupyterlab-spellchecker==0.6.0->-r requirements.txt (line 27)) (2.9.1)\n",
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      "Requirement already satisfied: prompt-toolkit!=3.0.0,!=3.0.1,<3.1.0,>=2.0.0 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from ipython>=5.0.0->ipykernel==5.5.3->-r requirements.txt (line 3)) (3.0.19)\n",
      "Requirement already satisfied: jedi>=0.16 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from ipython>=5.0.0->ipykernel==5.5.3->-r requirements.txt (line 3)) (0.18.0)\n",
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      "Requirement already satisfied: pytz>=2017.3 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from pandas<2.0.0,>=1.0.0->radcad==0.8.4->-r requirements.txt (line 1)) (2021.1)\n",
      "Requirement already satisfied: multiprocess>=0.70.12 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from pathos<0.3.0,>=0.2.7->radcad==0.8.4->-r requirements.txt (line 1)) (0.70.12.2)\n",
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      "Requirement already satisfied: sphinxcontrib-jsmath in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from sphinx<4,>=2->jupyter-book==0.11.1->-r requirements.txt (line 16)) (1.0.1)\n",
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     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Requirement already satisfied: charset-normalizer~=2.0.0 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from requests->jupyter-dash==0.4.0->-r requirements.txt (line 10)) (2.0.4)\n",
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      "Requirement already satisfied: soupsieve>1.2 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from beautifulsoup4<5,>=4.6.1->sphinx-book-theme~=0.1.0->jupyter-book==0.11.1->-r requirements.txt (line 16)) (2.2.1)\n",
      "Requirement already satisfied: wheel in /Users/rosseyre/.Trash/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/lib/python3.8/site-packages (from sphinx-togglebutton->jupyter-book==0.11.1->-r requirements.txt (line 16)) (0.33.1)\n",
      "Requirement already satisfied: pybtex-docutils>=1.0.0 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from sphinxcontrib-bibtex~=2.2.0->jupyter-book==0.11.1->-r requirements.txt (line 16)) (1.0.1)\n",
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      "Requirement already satisfied: latexcodec>=1.0.4 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from pybtex>=0.20->sphinxcontrib-bibtex~=2.2.0->jupyter-book==0.11.1->-r requirements.txt (line 16)) (2.0.1)\n",
      "Requirement already satisfied: greenlet!=0.4.17 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from sqlalchemy<1.5,>=1.3.12->jupyter-cache~=0.4.1->myst-nb~=0.12.0->jupyter-book==0.11.1->-r requirements.txt (line 16)) (1.1.0)\n",
      "Requirement already satisfied: cffi>=1.0.0 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from argon2-cffi->notebook==6.4.1->-r requirements.txt (line 14)) (1.14.6)\n",
      "Requirement already satisfied: pycparser in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from cffi>=1.0.0->argon2-cffi->notebook==6.4.1->-r requirements.txt (line 14)) (2.20)\n",
      "Requirement already satisfied: webencodings in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from bleach->nbconvert==5.6.1->-r requirements.txt (line 19)) (0.5.1)\n",
      "Requirement already satisfied: fn in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from cadCAD->cadCAD_tools==0.0.1.4->-r requirements.txt (line 22)) (0.4.3)\n",
      "Requirement already satisfied: funcy in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from cadCAD->cadCAD_tools==0.0.1.4->-r requirements.txt (line 22)) (1.16)\n",
      "Requirement already satisfied: dash-table==4.12.0 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from dash->jupyter-dash==0.4.0->-r requirements.txt (line 10)) (4.12.0)\n",
      "Requirement already satisfied: dash-core-components==1.17.1 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from dash->jupyter-dash==0.4.0->-r requirements.txt (line 10)) (1.17.1)\n",
      "Requirement already satisfied: dash-html-components==1.1.4 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from dash->jupyter-dash==0.4.0->-r requirements.txt (line 10)) (1.1.4)\n",
      "Requirement already satisfied: future in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from dash->jupyter-dash==0.4.0->-r requirements.txt (line 10)) (0.18.2)\n",
      "Requirement already satisfied: flask-compress in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from dash->jupyter-dash==0.4.0->-r requirements.txt (line 10)) (1.10.1)\n",
      "Requirement already satisfied: brotli in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from flask-compress->dash->jupyter-dash==0.4.0->-r requirements.txt (line 10)) (1.0.9)\n",
      "Requirement already satisfied: zipp>=0.5 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from importlib-metadata->myst-nb~=0.12.0->jupyter-book==0.11.1->-r requirements.txt (line 16)) (3.5.0)\n",
      "Requirement already satisfied: colorama in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from nbdime->jupyter-cache~=0.4.1->myst-nb~=0.12.0->jupyter-book==0.11.1->-r requirements.txt (line 16)) (0.4.4)\n",
      "Requirement already satisfied: jupyter-server-mathjax>=0.2.2 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from nbdime->jupyter-cache~=0.4.1->myst-nb~=0.12.0->jupyter-book==0.11.1->-r requirements.txt (line 16)) (0.2.3)\n",
      "Requirement already satisfied: GitPython!=2.1.4,!=2.1.5,!=2.1.6 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from nbdime->jupyter-cache~=0.4.1->myst-nb~=0.12.0->jupyter-book==0.11.1->-r requirements.txt (line 16)) (3.1.18)\n",
      "Requirement already satisfied: gitdb<5,>=4.0.1 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from GitPython!=2.1.4,!=2.1.5,!=2.1.6->nbdime->jupyter-cache~=0.4.1->myst-nb~=0.12.0->jupyter-book==0.11.1->-r requirements.txt (line 16)) (4.0.7)\n",
      "Requirement already satisfied: smmap<5,>=3.0.1 in /Users/rosseyre/Library/Python/3.8/lib/python/site-packages (from gitdb<5,>=4.0.1->GitPython!=2.1.4,!=2.1.5,!=2.1.6->nbdime->jupyter-cache~=0.4.1->myst-nb~=0.12.0->jupyter-book==0.11.1->-r requirements.txt (line 16)) (4.0.0)\n",
      "\u001b[33mWARNING: You are using pip version 21.2.2; however, version 21.2.4 is available.\n",
      "You should consider upgrading via the '/Users/rosseyre/.Trash/Xcode.app/Contents/Developer/usr/bin/python3 -m pip install --upgrade pip' command.\u001b[0m\n",
      "Note: you may need to restart the kernel to use updated packages.\n"
     ]
    }
   ],
   "source": [
    "%pip3 install -r requirements.txt"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "2446354f",
   "metadata": {},
   "source": [
    "## Check package version\n",
    "\n",
    "Both of the below operations should show the same package version."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 9,
   "id": "8d8d909c",
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Name: radcad\n",
      "Version: 0.8.4\n",
      "Summary: A Python package for dynamical systems modelling & simulation, inspired by and compatible with cadCAD\n",
      "Home-page: \n",
      "Author: CADLabs\n",
      "Author-email: benschza@users.noreply.github.com\n",
      "License: \n",
      "Location: /Users/rosseyre/Library/Python/3.8/lib/python/site-packages\n",
      "Requires: pathos, pandas\n",
      "Required-by: \n",
      "Note: you may need to restart the kernel to use updated packages.\n"
     ]
    }
   ],
   "source": [
    "%pip3 show radcad"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 10,
   "id": "b50fbcf6",
   "metadata": {},
   "outputs": [],
   "source": [
    "import radcad"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 11,
   "id": "3f1d9663",
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "'0.8.4'"
      ]
     },
     "execution_count": 11,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "radcad.__version__"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "458ab828",
   "metadata": {},
   "source": [
    "## Check Plotly output\n",
    "\n",
    "Should render a line chart."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 12,
   "id": "14b2633e",
   "metadata": {},
   "outputs": [
    {
     "data": {
      "application/vnd.plotly.v1+json": {
       "config": {
        "plotlyServerURL": "https://plot.ly"
       },
       "data": [
        {
         "hovertemplate": "x=%{x}<br>y=%{y}<extra></extra>",
         "legendgroup": "",
         "line": {
          "color": "#636efa",
          "dash": "solid"
         },
         "mode": "lines",
         "name": "",
         "orientation": "v",
         "showlegend": false,
         "type": "scatter",
         "x": [
          0,
          1,
          2
         ],
         "xaxis": "x",
         "y": [
          0,
          1,
          2
         ],
         "yaxis": "y"
        }
       ],
       "layout": {
        "legend": {
         "tracegroupgap": 0
        },
        "margin": {
         "t": 60
        },
        "template": {
         "data": {
          "bar": [
           {
            "error_x": {
             "color": "#2a3f5f"
            },
            "error_y": {
             "color": "#2a3f5f"
            },
            "marker": {
             "line": {
              "color": "#E5ECF6",
              "width": 0.5
             }
            },
            "type": "bar"
           }
          ],
          "barpolar": [
           {
            "marker": {
             "line": {
              "color": "#E5ECF6",
              "width": 0.5
             }
            },
            "type": "barpolar"
           }
          ],
          "carpet": [
           {
            "aaxis": {
             "endlinecolor": "#2a3f5f",
             "gridcolor": "white",
             "linecolor": "white",
             "minorgridcolor": "white",
             "startlinecolor": "#2a3f5f"
            },
            "baxis": {
             "endlinecolor": "#2a3f5f",
             "gridcolor": "white",
             "linecolor": "white",
             "minorgridcolor": "white",
             "startlinecolor": "#2a3f5f"
            },
            "type": "carpet"
           }
          ],
          "choropleth": [
           {
            "colorbar": {
             "outlinewidth": 0,
             "ticks": ""
            },
            "type": "choropleth"
           }
          ],
          "contour": [
           {
            "colorbar": {
             "outlinewidth": 0,
             "ticks": ""
            },
            "colorscale": [
             [
              0,
              "#0d0887"
             ],
             [
              0.1111111111111111,
              "#46039f"
             ],
             [
              0.2222222222222222,
              "#7201a8"
             ],
             [
              0.3333333333333333,
              "#9c179e"
             ],
             [
              0.4444444444444444,
              "#bd3786"
             ],
             [
              0.5555555555555556,
              "#d8576b"
             ],
             [
              0.6666666666666666,
              "#ed7953"
             ],
             [
              0.7777777777777778,
              "#fb9f3a"
             ],
             [
              0.8888888888888888,
              "#fdca26"
             ],
             [
              1,
              "#f0f921"
             ]
            ],
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\"xaxis\": {\"automargin\": true, \"gridcolor\": \"white\", \"linecolor\": \"white\", \"ticks\": \"\", \"title\": {\"standoff\": 15}, \"zerolinecolor\": \"white\", \"zerolinewidth\": 2}, \"yaxis\": {\"automargin\": true, \"gridcolor\": \"white\", \"linecolor\": \"white\", \"ticks\": \"\", \"title\": {\"standoff\": 15}, \"zerolinecolor\": \"white\", \"zerolinewidth\": 2}}}, \"xaxis\": {\"anchor\": \"y\", \"domain\": [0.0, 1.0], \"title\": {\"text\": \"x\"}}, \"yaxis\": {\"anchor\": \"x\", \"domain\": [0.0, 1.0], \"title\": {\"text\": \"y\"}}},                        {\"responsive\": true}                    ).then(function(){\n",
       "                            \n",
       "var gd = document.getElementById('ebf61f45-27d7-4eea-b897-aabcf777bb18');\n",
       "var x = new MutationObserver(function (mutations, observer) {{\n",
       "        var display = window.getComputedStyle(gd).display;\n",
       "        if (!display || display === 'none') {{\n",
       "            console.log([gd, 'removed!']);\n",
       "            Plotly.purge(gd);\n",
       "            observer.disconnect();\n",
       "        }}\n",
       "}});\n",
       "\n",
       "// Listen for the removal of the full notebook cells\n",
       "var notebookContainer = gd.closest('#notebook-container');\n",
       "if (notebookContainer) {{\n",
       "    x.observe(notebookContainer, {childList: true});\n",
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       "\n",
       "// Listen for the clearing of the current output cell\n",
       "var outputEl = gd.closest('.output');\n",
       "if (outputEl) {{\n",
       "    x.observe(outputEl, {childList: true});\n",
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      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "import plotly.express as px\n",
    "\n",
    "px.line(x=[0, 1, 2], y=[0, 1, 2])"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "86f51520",
   "metadata": {},
   "outputs": [],
   "source": []
  }
 ],
 "metadata": {
  "kernelspec": {
   "display_name": "Python (CADLabs Ethereum Economic Model)",
   "language": "python",
   "name": "python-cadlabs-eth-model"
  },
  "language_info": {
   "codemirror_mode": {
    "name": "ipython",
    "version": 3
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   "file_extension": ".py",
   "mimetype": "text/x-python",
   "name": "python",
   "nbconvert_exporter": "python",
   "pygments_lexer": "ipython3",
   "version": "3.8.2"
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 "nbformat_minor": 5
}