Update documentation links to 1.0.4 (#200)

Author: fboemer

README.md

@@ -8,19 +8,19 @@ Applications of Swift Homomorphic Encryption include:
 ## Overview
 Swift Homomorphic Encryption is a collection of libraries and executables.
 For more information, refer to documentation for the libraries:
-* [HomomorphicEncryptionProtobuf](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.3/documentation/homomorphicencryptionprotobuf)
-* [HomomorphicEncryption](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.3/documentation/homomorphicencryption)
-* [PrivateInformationRetrievalProtobuf](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.3/documentation/privateinformationretrievalprotobuf)
-* [PrivateInformationRetrieval](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.3/documentation/privateinformationretrieval)
-* [PrivateNearestNeighborSearchProtobuf](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.3/documentation/privatenearestneighborsearchprotobuf)
-* [PrivateNearestNeighborSearch](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.3/documentation/privatenearestneighborsearch)
+* [HomomorphicEncryptionProtobuf](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.4/documentation/homomorphicencryptionprotobuf)
+* [HomomorphicEncryption](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.4/documentation/homomorphicencryption)
+* [PrivateInformationRetrievalProtobuf](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.4/documentation/privateinformationretrievalprotobuf)
+* [PrivateInformationRetrieval](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.4/documentation/privateinformationretrieval)
+* [PrivateNearestNeighborSearchProtobuf](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.4/documentation/privatenearestneighborsearchprotobuf)
+* [PrivateNearestNeighborSearch](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.4/documentation/privatenearestneighborsearch)
 
 and executables:
-* [PIRGenerateDatabase](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.3/documentation/pirgeneratedatabase)
-* [PIRProcessDatabase](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.3/documentation/pirprocessdatabase)
-* [PIRShardDatabase](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.3/documentation/pirsharddatabase)
-* [PNNSGenerateDatabase](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.3/documentation/pnnsgeneratedatabase)
-* [PNNSProcessDatabase](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.3/documentation/pnnsprocessdatabase)
+* [PIRGenerateDatabase](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.4/documentation/pirgeneratedatabase)
+* [PIRProcessDatabase](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.4/documentation/pirprocessdatabase)
+* [PIRShardDatabase](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.4/documentation/pirsharddatabase)
+* [PNNSGenerateDatabase](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.4/documentation/pnnsgeneratedatabase)
+* [PNNSProcessDatabase](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.4/documentation/pnnsprocessdatabase)
 
 The documentation is hosted on the [Swift Package Index](https://swiftpackageindex.com/apple/swift-homomorphic-encryption).
 

Sources/HomomorphicEncryption/HomomorphicEncryption.docc/HomomorphicEncryption.md

@@ -5,19 +5,19 @@ Homomorphic Encryption (HE) enables computation on encrypted data.
 ## Overview
 Swift Homomorphic Encryption is a collection of libraries and executables implementing homomorphic encryption (HE) and applications, such as private information retrieval (PIR).
 For more information, refer to documentation for the libraries:
-* [HomomorphicEncryptionProtobuf](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.3/documentation/homomorphicencryptionprotobuf)
-* [HomomorphicEncryption](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.3/documentation/homomorphicencryption)
-* [PrivateInformationRetrievalProtobuf](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.3/documentation/privateinformationretrievalprotobuf)
-* [PrivateInformationRetrieval](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.3/documentation/privateinformationretrieval)
-* [PrivateNearestNeighborSearchProtobuf](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.3/documentation/privatenearestneighborsearchprotobuf)
-* [PrivateNearestNeighborSearch](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.3/documentation/privatenearestneighborsearch)
+* [HomomorphicEncryptionProtobuf](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.4/documentation/homomorphicencryptionprotobuf)
+* [HomomorphicEncryption](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.4/documentation/homomorphicencryption)
+* [PrivateInformationRetrievalProtobuf](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.4/documentation/privateinformationretrievalprotobuf)
+* [PrivateInformationRetrieval](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.4/documentation/privateinformationretrieval)
+* [PrivateNearestNeighborSearchProtobuf](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.4/documentation/privatenearestneighborsearchprotobuf)
+* [PrivateNearestNeighborSearch](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.4/documentation/privatenearestneighborsearch)
 
 and executables:
-* [PIRGenerateDatabase](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.3/documentation/pirgeneratedatabase)
-* [PIRProcessDatabase](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.3/documentation/pirprocessdatabase)
-* [PIRShardDatabase](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.3/documentation/pirsharddatabase)
-* [PNNSGenerateDatabase](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.3/documentation/pnnsgeneratedatabase)
-* [PNNSProcessDatabase](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.3/documentation/pnnsprocessdatabase)
+* [PIRGenerateDatabase](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.4/documentation/pirgeneratedatabase)
+* [PIRProcessDatabase](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.4/documentation/pirprocessdatabase)
+* [PIRShardDatabase](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.4/documentation/pirsharddatabase)
+* [PNNSGenerateDatabase](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.4/documentation/pnnsgeneratedatabase)
+* [PNNSProcessDatabase](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.4/documentation/pnnsprocessdatabase)
 
 ### Background
 Swift Homomorphic Encryption implements a special form of cryptography called homomorphic encryption (HE).

Sources/HomomorphicEncryptionProtobuf/HomomorphicEncryptionProtobuf.docc/HomomorphicEncryptionProtobuf.md

@@ -1,11 +1,11 @@
 # ``HomomorphicEncryptionProtobuf``
 
-Protocol buffer support for [HomomorphicEncryption](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.3/documentation/homomorphicencryption)
+Protocol buffer support for [HomomorphicEncryption](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.4/documentation/homomorphicencryption)
 
 ## Overview
-`HomomorphicEncryptionProtobuf` contains supports for using [HomomorphicEncryption](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.3/documentation/homomorphicencryption) with [protocol buffers](https://protobuf.dev/), commonly referred to as `protobuf`.
+`HomomorphicEncryptionProtobuf` contains supports for using [HomomorphicEncryption](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.4/documentation/homomorphicencryption) with [protocol buffers](https://protobuf.dev/), commonly referred to as `protobuf`.
 This module contains:
 * the generated Swift code to use the protobuf types.
-* conversion between protobuf types and [HomomorphicEncryption](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.3/documentation/homomorphicencryption) runtime types.
+* conversion between protobuf types and [HomomorphicEncryption](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.4/documentation/homomorphicencryption) runtime types.
 
 The protobuf schemas are defined at [https://github.com/apple/swift-homomorphic-encryption-protobuf](https://github.com/apple/swift-homomorphic-encryption-protobuf).

Sources/PIRGenerateDatabase/PIRGenerateDatabase.docc/PIRGenerateDatabase.md

@@ -29,7 +29,7 @@ PIRGenerateDatabase \
 
 This will generate a database of 100 rows, with keywords 0 to 99, and each value repeating the keyword for 10 to 20 bytes.
 
-The database is a serialized [Apple_SwiftHomomorphicEncryption_Pir_V1_KeywordDatabase](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.3/documentation/privateinformationretrievalprotobuf/apple_swifthomomorphicencryption_pir_v1_keyworddatabase).
+The database is a serialized [Apple_SwiftHomomorphicEncryption_Pir_V1_KeywordDatabase](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.4/documentation/privateinformationretrievalprotobuf/apple_swifthomomorphicencryption_pir_v1_keyworddatabase).
 For readability, the `.txtpb` extension ensures the output database will be saved in protocol buffer text format.
 
 > Note: For a more compact format, use the `.binpb` extension to save the database in protocol buffer binary format.

Sources/PIRProcessDatabase/PIRProcessDatabase.docc/PIRProcessDatabase.md

@@ -26,10 +26,10 @@ Run `PIRProcessDatabase --help` to get a sample JSON configuration.
 ### Required Configuration Parameters
 
 There are four required parameters:
-1. `rlweParameters` is one of the [PredefinedRlweParameters](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.3/documentation/homomorphicencryption/predefinedrlweparameters),
+1. `rlweParameters` is one of the [PredefinedRlweParameters](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.4/documentation/homomorphicencryption/predefinedrlweparameters),
 e.g., `n_4096_logq_27_28_28_logt_5`.
 2. `inputDatabase` is the path to the unprocessed input database. It must be a
-serialized [Apple_SwiftHomomorphicEncryption_Pir_V1_KeywordDatabase](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.3/documentation/privateinformationretrievalprotobuf/apple_swifthomomorphicencryption_pir_v1_keyworddatabase).
+serialized [Apple_SwiftHomomorphicEncryption_Pir_V1_KeywordDatabase](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.4/documentation/privateinformationretrievalprotobuf/apple_swifthomomorphicencryption_pir_v1_keyworddatabase).
 
 > Note: The `PIRGenerateDatabase` binary can be used to generate a sample database.
 
@@ -51,7 +51,7 @@ A minimal configuration sample is
 }
 ```
 The only required parameter variable which affects performance is
-`rlweParameters`. These parameters are picked from a set of [PredefinedRlweParameters](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.3/documentation/homomorphicencryption/predefinedrlweparameters).
+`rlweParameters`. These parameters are picked from a set of [PredefinedRlweParameters](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.4/documentation/homomorphicencryption/predefinedrlweparameters).
 RLWE parameters are defined by ring dimension `n`, a ciphertext modulus bit
 length `log q`, and plaintext modulus bit length, `log t`.
 

Sources/PIRProcessDatabase/PIRProcessDatabase.docc/ReusingPirParameters.md

@@ -84,7 +84,7 @@ There are a few ways to find a good `bucketCount`:
   If the processing throws a `PirError.failedToConstructCuckooTable` or logs `Failed to construct Cuckoo table`, this is an indication the chosen bucket count was too small.
   Choose larger `bucketCounts` until the processing works.
 
-* Add a callback to [ProcessKeywordDatabase.processShard](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.3/documentation/privateinformationretrieval/processkeyworddatabase/processshard(shard:with:)).
+* Add a callback to [ProcessKeywordDatabase.processShard](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.4/documentation/privateinformationretrieval/processkeyworddatabase/processshard(shard:with:)).
   This callback can be used to report the bucketCount after the cuckoo table was created.
 A sample callback is
 ```swift

Sources/PIRShardDatabase/PIRShardDatabase.docc/PIRShardDatabase.md

@@ -4,24 +4,24 @@ Keyword PIR database sharding
 
 ## Overview
 
-[PIRShardDatabase](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.3/documentation/pirsharddatabase) is an executable which divides a database into disjoint shards.
-Each resulting shard is suitable for processing with the [PIRProcessDatabase](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.3/documentation/pirprocessdatabase) executable.
+[PIRShardDatabase](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.4/documentation/pirsharddatabase) is an executable which divides a database into disjoint shards.
+Each resulting shard is suitable for processing with the [PIRProcessDatabase](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.4/documentation/pirprocessdatabase) executable.
 
 `PIRShardDatabase` supports two sharding settings:
 * `shardCount` randomly shards the database using the specified of shards.
 * `entryCountPerShard` shards the database using enough shards such that the average shard contains the specified number of entries.
 
 ### Requirements
-Build the [PIRProcessDatabase](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.3/documentation/pirprocessdatabase) executable by running:
+Build the [PIRProcessDatabase](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.4/documentation/pirprocessdatabase) executable by running:
 ```sh
 swift build -c release --target PIRProcessDatabase
 ```
 The binary will be generated in `.build/release/PIRProcessDatabase`.
 
 For the example below, you'll also need to install the
-[PIRGenerateDatabase](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.3/documentation/pirgeneratedatabse)
+[PIRGenerateDatabase](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.4/documentation/pirgeneratedatabse)
 executable in a similar manner as
-[PIRShardDatabase](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.3/documentation/pirsharddatabase).
+[PIRShardDatabase](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.4/documentation/pirsharddatabase).
 
 ### Example
 

Sources/PNNSGenerateDatabase/PNNSGenerateDatabase.docc/PNNSGenerateDatabase.md

@@ -5,7 +5,7 @@ Private Nearest Neighbor Search database generation
 ## Overview
 
 `PNNSGenerateDatabase` is an executable which generates a sample database for testing.
-The resulting database can be processed with the [PNNSProcessDatabase](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.3/documentation/pnnsprocessdatabase) executable.
+The resulting database can be processed with the [PNNSProcessDatabase](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.4/documentation/pnnsprocessdatabase) executable.
 
 ### Requirements
 First ensure sure that the `~/.swiftpm/bin` directory is on your `$PATH`.

Sources/PNNSProcessDatabase/PNNSProcessDatabase.docc/PNNSProcessDatabase.md

@@ -32,12 +32,12 @@ Run `PNNSProcessDatabase --help` to get a sample JSON configuration.
 #### Required Configuration Parameters
 
 There are three required parameters:
-1. `rlweParameters` is one of the [PredefinedRlweParameters](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.3/documentation/homomorphicencryption/predefinedrlweparameters),
+1. `rlweParameters` is one of the [PredefinedRlweParameters](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.4/documentation/homomorphicencryption/predefinedrlweparameters),
 e.g., `n_8192_logq_3x55_logt_30`.
 2. `inputDatabase` is the path to the unprocessed input database. It must be a
 serialized `Apple_SwiftHomomorphicEncryption_Pnns_V1_Database`.
 
-> Note: The [PNNSGenerateDatabase](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.3/documentation/pnnsgeneratedatabase) binary can be used to generate a sample database.
+> Note: The [PNNSGenerateDatabase](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.4/documentation/pnnsgeneratedatabase) binary can be used to generate a sample database.
 
 3. `outputDatabase` is the path to where the processed database will be
 written. This string should have extension either `.txtpb` or `.binpb`.
@@ -51,8 +51,8 @@ A minimal configuration sample is
 }
 ```
 The only required parameter variable which affects performance is
-`rlweParameters`. These parameters are picked from a set of [PredefinedRlweParameters](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.3/documentation/homomorphicencryption/predefinedrlweparameters).
-See the [EncryptionParameters snippet]( https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.3/documentation/homomorphicencryption/usingswifthomomorphicencryption#Encryption-Parameters) for more information on encryption parameters.
+`rlweParameters`. These parameters are picked from a set of [PredefinedRlweParameters](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.4/documentation/homomorphicencryption/predefinedrlweparameters).
+See the [EncryptionParameters snippet]( https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.4/documentation/homomorphicencryption/usingswifthomomorphicencryption#Encryption-Parameters) for more information on encryption parameters.
 
 For `batchSize: 1`, `n_4096_logq_27_28_28_logt_16` may be a good choice.
 For larger batch sizes, `n_8192_logq_3x55_logt_30` may be a good choice.
@@ -80,7 +80,7 @@ For each trial, a query is checked for correctness.
 
 ### Example
 
-Our example relies on the [PNNSGenerateDatabase](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.3/documentation/pnnsgeneratedatabase) executable.
+Our example relies on the [PNNSGenerateDatabase](https://swiftpackageindex.com/apple/swift-homomorphic-encryption/1.0.4/documentation/pnnsgeneratedatabase) executable.
 To install it, run
 ```sh
 swift package experimental-install -c release --product PNNSGenerateDatabase