Python integration tests on Ubuntu #6
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| name: Python integration tests on Ubuntu | |
| on: | |
| workflow_dispatch: | |
| jobs: | |
| python-integration-tests: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y zlib1g-dev | |
| - name: Install Python packages | |
| run: | | |
| python3 -m venv .venv | |
| . .venv/bin/activate | |
| pip install --upgrade pip | |
| pip install nanobind pytest wheel auditwheel hatch numpy | |
| - name: Configure | |
| run: | | |
| . .venv/bin/activate | |
| cmake -B build \ | |
| -DCMAKE_CXX_COMPILER=g++-14 \ | |
| -DBUILD_PYTHON=on \ | |
| -DPACKAGE_PYTHON=on \ | |
| -DCMAKE_BUILD_TYPE=Release | |
| - name: Build | |
| run: | | |
| . .venv/bin/activate | |
| cmake --build build -j4 | |
| - name: Download query data | |
| run: | | |
| wget -nv https://smithlabresearch.org/transferase/other/cpgIslandExtUnmasked_hg38.bed3 | |
| - name: Run the test script | |
| run: | | |
| . .venv/bin/activate | |
| pip install build/python/dist/transferase*whl | |
| python python/test/integration_tests.py |