update

Author: friedenberg

go/.env

@@ -1 +1,2 @@
+PATH="$PWD/build:$PATH"
 export GOEXPERIMENT=aliastypeparams

go/CLAUDE.md

@@ -1,115 +1,130 @@
 # CLAUDE.md
 
-This file provides guidance to Claude Code (claude.ai/code) when working with code in this repository.
+This file provides guidance to Claude Code (claude.ai/code) when working with
+code in this repository.
 
 ## Project Overview
 
-Zit is a Zettelkasten-style knowledge management system written in Go. It provides Git-like version control for managing interconnected notes (Zettels) with content-addressable storage, sophisticated querying, and remote synchronization capabilities.
+Dodder is a Zettelkasten-style knowledge management system written in Go. It
+provides Git-like version control for managing interconnected notes (Zettels)
+with content-addressable storage, sophisticated querying, and remote
+synchronization capabilities.
 
 ## Build and Development Commands
 
 ### Core Development Tasks
-- **Build**: `just build` (builds binary to `build/zit`)
-- **Test**: `just test` (runs Go unit tests + BATS integration tests)
-- **Unit Tests Only**: `just test-go-unit` or `go test -v ./...`
-- **Single Package Test**: `go test -v ./src/path/to/package`
-- **Clean**: `just clean` (clears Go caches)
-- **Check**: `just check` (vulnerability scan + vet)
-- **Generate**: `just build-go-generate` (runs `go generate ./...`)
+
+-   **Build**: `just build` (builds binary to `build/dodder`)
+-   **Test**: `just test` (runs Go unit tests + BATS integration tests)
+-   **Unit Tests Only**: `just test-go-unit` or `go test -v ./...`
+-   **Single Package Test**: `go test -v ./src/path/to/package`
+-   **Clean**: `just clean` (clears Go caches)
+-   **Check**: `just check` (vulnerability scan + vet)
+-   **Generate**: `just build-go-generate` (runs `go generate ./...`)
 
 ### Code Quality
-- **Format**: `just codemod-go-imports` (runs goimports on all Go files)
-- **Vulnerability Check**: `just check-go-vuln`
-- **Go Vet**: `just check-go-vet`
+
+-   **Format**: `just codemod-go-imports` (runs goimports on all Go files)
+-   **Vulnerability Check**: `just check-go-vuln`
+-   **Go Vet**: `just check-go-vet`
 
 ### Alternative Build Systems
-- **Nix**: `just build-nix` (requires Nix with flakes)
-- **Docker**: `just build-docker`
+
+-   **Nix**: `just build-nix` (requires Nix with flakes)
+-   **Docker**: `just build-docker`
 
 ## Architecture Overview
 
 ### NATO Phonetic Module Organization
-The codebase uses NATO phonetic alphabet naming for layered architecture with strict dependency ordering (each layer can only depend on previous layers):
-
-- **alfa**: Foundation (errors, interfaces, primitives)
-- **bravo**: Basic utilities (UI, pools, values, flags)
-- **charlie**: Collections and data structures (sets, I/O, files)
-- **delta**: Data processing (SHA, strings, Lua VM, encryption)
-- **echo**: Object identification and metadata systems
-- **foxtrot**: Configuration and workspace management
-- **golf**: Command framework and object metadata
-- **hotel**: Repository and environment management
-- **india**: Indexing and search systems
-- **juliett**: SKU (core object management and storage)
-- **kilo**: Query system and object formatting
-- **lima**: Storage engines and text organization
-- **mike**: Main store implementation
-- **november**: Local working copy management
-- **oscar**: Remote operations and HTTP API
-- **papa**: User operations and command components
-- **quebec**: CLI command definitions
+
+The codebase uses NATO phonetic alphabet naming for layered architecture with
+strict dependency ordering (each layer can only depend on previous layers):
+
+-   **alfa**: Foundation (errors, interfaces, primitives)
+-   **bravo**: Basic utilities (UI, pools, values, flags)
+-   **charlie**: Collections and data structures (sets, I/O, files)
+-   **delta**: Data processing (SHA, strings, Lua VM, encryption)
+-   **echo**: Object identification and metadata systems
+-   **foxtrot**: Configuration and workspace management
+-   **golf**: Command framework and object metadata
+-   **hotel**: Repository and environment management
+-   **india**: Indexing and search systems
+-   **juliett**: SKU (core object management and storage)
+-   **kilo**: Query system and object formatting
+-   **lima**: Storage engines and text organization
+-   **mike**: Main store implementation
+-   **november**: Local working copy management
+-   **oscar**: Remote operations and HTTP API
+-   **papa**: User operations and command components
+-   **quebec**: CLI command definitions
 
 ### Core Domain Model
 
 #### Key Concepts
-- **Zettels**: Fundamental content units with unique IDs and metadata
-- **SKUs (Stock Keeping Units)**: Versioned objects representing all content types
-- **Object IDs**: Three-part identifiers with genre/type information
-- **Content-Addressable Storage**: SHA-based blob storage with inventory tracking
-- **Tags and Types**: Hierarchical organization system
-- **Working Copy**: Git-like checked-out file system
+
+-   **Zettels**: Fundamental content units with unique IDs and metadata
+-   **SKUs (Stock Keeping Units)**: Versioned objects representing all content
+    types
+-   **Object IDs**: Three-part identifiers with genre/type information
+-   **Content-Addressable Storage**: SHA-based blob storage with inventory
+    tracking
+-   **Tags and Types**: Hierarchical organization system
+-   **Working Copy**: Git-like checked-out file system
 
 #### Critical Types and Interfaces
-- `sku.Transacted`: Core versioned object type (src/juliett/sku/)
-- `interfaces.ObjectId`: Universal identifier interface (src/alfa/interfaces/)
-- `store.Store`: Main storage engine (src/mike/store/)
-- `command.Command`: CLI command interface (src/golf/command/)
+
+-   `sku.Transacted`: Core versioned object type (src/juliett/sku/)
+-   `interfaces.ObjectId`: Universal identifier interface (src/alfa/interfaces/)
+-   `store.Store`: Main storage engine (src/mike/store/)
+-   `command.Command`: CLI command interface (src/golf/command/)
 
 ### Storage Architecture
-- **Blob Store**: Content-addressable binary storage
-- **Inventory Lists**: Object metadata and relationship tracking  
-- **Stream Index**: Binary indexing for fast object access
-- **Zettel ID Index**: Specialized indexing for note relationships
-- **Dormant Index**: Inactive/archived object tracking
+
+-   **Blob Store**: Content-addressable binary storage
+-   **Inventory Lists**: Object metadata and relationship tracking\
+-   **Stream Index**: Binary indexing for fast object access
+-   **Zettel ID Index**: Specialized indexing for note relationships
+-   **Dormant Index**: Inactive/archived object tracking
 
 ### Command System
-Commands are registered in `src/quebec/commands/` and follow a consistent pattern:
-- Flag parsing via `flag.FlagSet`
-- Request objects with context and configuration
-- Standardized error handling through `alfa/errors`
+
+Commands are registered in `src/quebec/commands/` and follow a consistent
+pattern: - Flag parsing via `flag.FlagSet` - Request objects with context and
+configuration - Standardized error handling through `alfa/errors`
 
 ## Key Development Patterns
 
 ### Error Handling
-Uses custom error system in `src/alfa/errors/` with:
-- Context-aware error wrapping
-- Stack trace support
-- Signal handling for graceful shutdown
-- Helpful error formatting
+
+Uses custom error system in `src/alfa/errors/` with: - Context-aware error
+wrapping - Stack trace support - Signal handling for graceful shutdown - Helpful
+error formatting
 
 ### Object Lifecycle
-1. Objects created as `sku.Proto` (prototype)
-2. Transacted through `sku.Transacted` 
-3. Stored via content-addressable SHA
-4. Indexed for query and retrieval
-5. Can be checked out to filesystem
+
+1.  Objects created as `sku.Proto` (prototype)
+2.  Transacted through `sku.Transacted`
+3.  Stored via content-addressable SHA
+4.  Indexed for query and retrieval
+5.  Can be checked out to filesystem
 
 ### Testing Strategy
-- Unit tests: `*_test.go` files throughout codebase
-- Integration tests: BATS framework in `zz-tests_bats/`
-- Test data: Generated fixtures via `test-generate_fixtures`
+
+-   Unit tests: `*_test.go` files throughout codebase
+-   Integration tests: BATS framework in `zz-tests_bats/`
+-   Test data: Generated fixtures via `test-generate_fixtures`
 
 ## Module Import Patterns
 
-When working with this codebase:
-- Import paths follow `code.linenisgreat.com/dodder/go/zit/src/{module}/{package}`
-- Respect the NATO alphabet dependency hierarchy
-- Use existing interfaces rather than concrete types where possible
-- Follow established patterns in similar modules
+When working with this codebase: - Import paths follow
+`code.linenisgreat.com/dodder/go/src/{module}/{package}` - Respect the NATO
+alphabet dependency hierarchy - Use existing interfaces rather than concrete
+types where possible - Follow established patterns in similar modules
 
 ## Important Files for Understanding System
-- `main.go`: Application entry point and error handling
-- `src/quebec/commands/main.go`: Command dispatch system
-- `src/juliett/sku/main.go`: Core object model
-- `src/mike/store/main.go`: Primary storage implementation
-- `src/november/local_working_copy/main.go`: Working copy management
+
+-   `main.go`: Application entry point and error handling
+-   `src/quebec/commands/main.go`: Command dispatch system
+-   `src/juliett/sku/main.go`: Core object model
+-   `src/mike/store/main.go`: Primary storage implementation
+-   `src/november/local_working_copy/main.go`: Working copy management

go/bin/fix_redundant_import_alisas.bash

@@ -6,12 +6,12 @@ trap "rm -rf '$tmp'" EXIT
 
 cmd_ag=(
   ag
-  '\b(\w+)\b "github.com/friedenberg/zit/src/\w+/\1"'
+  '\b(\w+)\b "github.com/friedenberg/dodder/src/\w+/\1"'
   -l0
 )
 
 if "${cmd_ag[@]}" >"$tmp"; then
-  xargs -0 sed -E -i'' 's#(\w+) ("github.com/friedenberg/zit/src/\w+/\1")#\2#g' <"$tmp"
+  xargs -0 sed -E -i'' 's#(\w+) ("github.com/friedenberg/dodder/src/\w+/\1")#\2#g' <"$tmp"
 fi
 
 goimports -w ./

go/bin/graph_dependencies

@@ -1,7 +1,7 @@
 #! /bin/bash -e
 
 print_matches() (
-	ag "code.linenisgreat.com/dodder/go/zit/$1" -l </dev/null |
+	ag "code.linenisgreat.com/dodder/go/$1" -l </dev/null |
 		cut -d'/' -f1-3 |
 		sort -u
 )

go/bin/list_package_deps

@@ -1,6 +1,6 @@
 #! /bin/bash -e
 
-pkg="code.linenisgreat.com/dodder/go/zit"
+pkg="code.linenisgreat.com/dodder/go"
 
 ag_print_matching() (
   query="$1"

go/bin/packages_deps.bash

@@ -0,0 +1,3 @@
+#! /bin/bash -e
+
+ag "github.com/friedenberg/dodder/\w+" "$@" -o --nofile --nocolor --nogroup | sort -u

go/bin/populate

@@ -2,9 +2,9 @@
 
 dir="$(dirname "$0")/.."
 lines="${1:-0}"
-zit="$dir/build/zit"
+dodder="$dir/build/dodder"
 
-cmd="xargs -0 caffeinate -imsd $zit new -filter $dir/bin/z_to_zit.awk"
+cmd="xargs -0 caffeinate -imsd $dodder new -filter $dir/bin/z_to_zit.awk"
 
 if [[ "$lines" -eq 0 ]]; then
   find ~/Zettelkasten -type f -iname '*.md' -print0 \

go/bin/zit_package_deps.bash

@@ -48,9 +48,9 @@ func main() {
 			var normalError errors.StackTracer
 
 			if errors.As(err, &normalError) && !normalError.ShouldShowStackTrace() {
-				ui.Err().Printf("\n\nzit failed with error:\n%s", normalError.Error())
+				ui.Err().Printf("\n\ndodder failed with error:\n%s", normalError.Error())
 			} else {
-				ui.Err().Printf("\n\nzit failed with error:\n%s", err)
+				ui.Err().Printf("\n\ndodder failed with error:\n%s", err)
 			}
 		}
 

go/cmd/der/main.go

@@ -48,9 +48,9 @@ func main() {
 			var normalError errors.StackTracer
 
 			if errors.As(err, &normalError) && !normalError.ShouldShowStackTrace() {
-				ui.Err().Printf("\n\nzit failed with error:\n%s", normalError.Error())
+				ui.Err().Printf("\n\ndodder failed with error:\n%s", normalError.Error())
 			} else {
-				ui.Err().Printf("\n\nzit failed with error:\n%s", err)
+				ui.Err().Printf("\n\ndodder failed with error:\n%s", err)
 			}
 		}