RAiSD-AI/environment-raisd-ai-cuda.yml at master · alachins/RAiSD-AI · GitHub

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name: raisd-ai-cuda
channels:
  - pytorch
  - nvidia
  - bioconda
  - conda-forge
  - defaults
dependencies:
  - _libgcc_mutex=0.1=conda_forge
  - _openmp_mutex=4.5=2_gnu
  - mkl
  - mkl-service
  - _tflow_select=2.3.0=mkl
  - abseil-cpp=20211102.0=hd4dd3e8_0
  - absl-py=2.1.0=py38h06a4308_0
  - aiohttp=3.9.5=py38h5eee18b_0
  - aiosignal=1.2.0=pyhd3eb1b0_0
  - appdirs=1.4.4=pyh9f0ad1d_0
  - asciitree=0.3.3=py_2
  - astunparse=1.6.3=py_0
  - async-timeout=4.0.3=py38h06a4308_0
  - attrs=24.2.0=pyh71513ae_0
  - bcftools=1.17=h3cc50cf_1
  - blas=*=mkl
  - blinker=1.6.2=py38h06a4308_0
  - brotli=1.0.9=he6710b0_2
  - brotli-python=1.1.0=py38h17151c0_1
  - bzip2=1.0.8=h4bc722e_7
  - c-ares=1.33.1=heb4867d_0
  - ca-certificates=2024.9.24=h06a4308_0
  - cachetools=5.3.3=py38h06a4308_0
  - certifi=2024.8.30=py38h06a4308_0
  - cffi=1.17.0=py38heb5c249_0
  - charset-normalizer=3.3.2=pyhd8ed1ab_0
  - click=8.1.7=py38h06a4308_0
  - contourpy=1.0.5=py38hdb19cb5_0
  - cryptography=41.0.3=py38h130f0dd_0
  - cudatoolkit=11.8.0=h6a678d5_0
  - cycler=0.11.0=pyhd3eb1b0_0
  - cyrus-sasl=2.1.28=h9c0eb46_1
  - dbus=1.13.18=hb2f20db_0
  - demes=0.2.3=pyhd8ed1ab_0
  - expat=2.6.3=h6a678d5_0
  - fasteners=0.17.3=pyhd8ed1ab_0
  - filelock=3.13.1=py38h06a4308_0
  - flatbuffers=24.3.25=h6a678d5_0
  - fontconfig=2.14.1=hef1e5e3_0
  - fonttools=4.51.0=py38h5eee18b_0
  - freetype=2.12.1=h4a9f257_0
  - frozenlist=1.4.0=py38h5eee18b_0
  - gast=0.5.3=pyhd3eb1b0_0
  - giflib=5.2.1=h5eee18b_3
  - glib=2.78.4=h6a678d5_0
  - glib-tools=2.78.4=h6a678d5_0
  - gmp=6.2.1=h295c915_3
  - gmpy2=2.1.2=py38heeb90bb_0
  - google-auth=2.29.0=py38h06a4308_0
  - google-auth-oauthlib=0.4.4=pyhd3eb1b0_0
  - google-pasta=0.2.0=pyhd3eb1b0_0
  - grpc-cpp=1.46.1=h33aed49_1
  - grpcio=1.42.0=py38hce63b2e_0
  - gsl=2.7=he838d99_0
  - gst-plugins-base=1.14.1=h6a678d5_1
  - gstreamer=1.14.1=h5eee18b_1
  - h2=4.1.0=pyhd8ed1ab_0
  - h5py=3.11.0=py38hbe37b52_0
  - hdf5=1.12.1=h70be1eb_2
  - hpack=4.0.0=pyh9f0ad1d_0
  - htslib=1.17=h6bc39ce_1
  - humanize=4.10.0=pyhd8ed1ab_0
  - hyperframe=6.0.1=pyhd8ed1ab_0
  - icu=58.2=he6710b0_3
  - idna=3.8=pyhd8ed1ab_0
  - importlib-metadata=8.4.0=pyha770c72_0
  - importlib_metadata=8.4.0=hd8ed1ab_0
  - importlib_resources=6.4.4=pyhd8ed1ab_0
  - jinja2=3.1.4=py38h06a4308_0
  - jpeg=9e=h5eee18b_3
  - jsonschema=4.23.0=pyhd8ed1ab_0
  - jsonschema-specifications=2023.12.1=pyhd8ed1ab_0
  - kastore=0.3.2=py38he82f83a_3
  - keras=2.8.0=py38h06a4308_0
  - keras-preprocessing=1.1.2=pyhd3eb1b0_0
  - keyutils=1.6.1=h166bdaf_0
  - kiwisolver=1.4.4=py38h6a678d5_0
  - krb5=1.20.1=hf9c8cef_0
  - ld_impl_linux-64=2.40=hf3520f5_7
  - libclang=14.0.6=default_hc6dbbc7_1
  - libclang13=14.0.6=default_he11475f_1
  - libcups=2.4.2=ha637b67_0
  - libcurl=7.88.1=h91b91d3_2
  - libdeflate=1.21=h4bc722e_0
  - libedit=3.1.20191231=he28a2e2_2
  - libev=4.33=hd590300_2
  - libffi=3.4.2=h7f98852_5
  - libgcc=14.1.0=h77fa898_1
  - libgcc-ng=14.1.0=h69a702a_1
  - libgfortran=14.1.0=h69a702a_1
  - libgfortran-ng=14.1.0=h69a702a_1
  - libgfortran5=14.1.0=hc5f4f2c_1
  - libglib=2.78.4=hdc74915_0
  - libgomp=14.1.0=h77fa898_1
  - libiconv=1.16=h5eee18b_3
  - libllvm14=14.0.6=hecde1de_4
  - libnghttp2=1.52.0=ha637b67_1
  - libnsl=2.0.1=hd590300_0
  - libpng=1.6.39=h5eee18b_0
  - libpq=12.15=h37d81fd_1
  - libprotobuf=3.20.3=he621ea3_0
  - libsqlite=3.46.0=hde9e2c9_0
  - libssh2=1.10.0=h37d81fd_2
  - libstdcxx=14.1.0=hc0a3c3a_1
  - libstdcxx-ng=14.1.0=h4852527_1
  - libtiff=4.2.0=hecacb30_2
  - libuuid=2.38.1=h0b41bf4_0
  - libwebp-base=1.3.2=h5eee18b_0
  - libxcb=1.15=h7f8727e_0
  - libxcrypt=4.4.36=hd590300_1
  - libxkbcommon=1.0.1=hfa300c1_0
  - libxml2=2.9.14=h74e7548_0
  - libzlib=1.2.13=h4ab18f5_6
  - markdown=3.4.1=py38h06a4308_0
  - markupsafe=2.1.3=py38h5eee18b_0
  - matplotlib=3.7.1=py38h06a4308_1
  - matplotlib-base=3.7.1=py38h417a72b_1
  - mpc=1.1.0=h10f8cd9_1
  - mpfr=4.0.2=hb69a4c5_1
  - mpmath=1.3.0=py38h06a4308_0
  - msgpack-python=1.0.8=py38hea7755e_0
  - msprime=1.2.0=py38h313c355_3
  - multidict=6.0.4=py38h5eee18b_0
  - mysql=5.7.24=hbb652a2_0
  - ncurses=6.5=he02047a_1
  - networkx=3.1=py38h06a4308_0
  - ninja=1.10.2=h06a4308_5
  - ninja-base=1.10.2=hd09550d_5
  - numcodecs=0.12.1=py38h854fd01_1
  - numpy=1.24.4=py38h59b608b_0
  - oauthlib=3.2.2=py38h06a4308_0
  - olefile=0.46=pyhd3eb1b0_0
  - openssl=1.1.1w=h7f8727e_0
  - opt_einsum=3.3.0=pyhd3eb1b0_1
  - packaging=24.1=pyhd8ed1ab_0
  - pandas=2.0.3=py38h01efb38_1
  - pcre2=10.42=hebb0a14_1
  - perl=5.32.1=7_hd590300_perl5
  - pillow=7.0.0=py38hb39fc2d_0
  - pip=24.2=pyhd8ed1ab_0
  - pkgutil-resolve-name=1.3.10=pyhd8ed1ab_1
  - platformdirs=4.2.2=pyhd8ed1ab_0
  - ply=3.11=py38_0
  - pooch=1.8.2=pyhd8ed1ab_0
  - protobuf=3.20.3=py38h6a678d5_0
  - pyasn1=0.4.8=pyhd3eb1b0_0
  - pyasn1-modules=0.2.8=py_0
  - pycparser=2.22=pyhd8ed1ab_0
  - pyjwt=2.8.0=py38h06a4308_0
  - pyopenssl=23.2.0=py38h06a4308_0
  - pyparsing=3.1.4=pyhd8ed1ab_0
  - pyqt=5.15.10=py38h6a678d5_0
  - pyqt5-sip=12.13.0=py38h5eee18b_0
  - pyslim=1.0.4=pyhd8ed1ab_0
  - pysocks=1.7.1=pyha2e5f31_6
  - python=3.8.15=h7a1cb2a_2
  - python-dateutil=2.9.0=pyhd8ed1ab_0
  - python-flatbuffers=24.3.25=py38h06a4308_0
  - python-tzdata=2024.1=pyhd8ed1ab_0
  - python_abi=3.8=2_cp38
  - pytorch=2.0.1
  - pytorch-cuda=11.8
  - pytz=2024.1=pyhd8ed1ab_0
  - pyyaml=6.0.1=py38h5eee18b_0
  - qt-main=5.15.2=h5b8104b_9
  - re2=2022.04.01=h295c915_0
  - readline=8.2=h8228510_1
  - referencing=0.35.1=pyhd8ed1ab_0
  - requests=2.32.3=pyhd8ed1ab_0
  - requests-oauthlib=2.0.0=py38h06a4308_0
  - rpds-py=0.20.0=py38h4005ec7_0
  - rsa=4.7.2=pyhd3eb1b0_1
  - ruamel.yaml=0.18.6=py38h01eb140_0
  - ruamel.yaml.clib=0.2.8=py38h01eb140_0
  - scipy=1.10.1=py38h59b608b_3
  - setuptools=72.2.0=pyhd8ed1ab_0
  - sip=6.7.12=py38h6a678d5_0
  - six=1.16.0=pyh6c4a22f_0
  - slim=4.1=h59595ed_0
  - snappy=1.2.1=h6a678d5_0
  - sqlite=3.45.3=h5eee18b_0
  - stdpopsim=0.2.0=pyhd8ed1ab_0
  - svgwrite=1.4.3=pyhd8ed1ab_0
  - sympy=1.12=py38h06a4308_0
  - tensorboard=2.8.0=py38h06a4308_0
  - tensorboard-data-server=0.6.1=py38h52d8a92_0
  - tensorboard-plugin-wit=1.8.1=py38h06a4308_0
  - tensorflow=2.8.2=mkl_py38hb41d75a_0
  - tensorflow-base=2.8.2=mkl_py38hf890080_0
  - tensorflow-estimator=2.8.0=py38hb070fc8_0
  - termcolor=2.1.0=py38h06a4308_0
  - tk=8.6.13=noxft_h4845f30_101
  - tomli=2.0.1=py38h06a4308_0
  - torchvision=0.15.2=cuda118py38h196c800_0
  - tornado=6.4.1=py38h5eee18b_0
  - tskit=0.5.6=py38he82f83a_2
  - typing-extensions=4.11.0=py38h06a4308_0
  - typing_extensions=4.11.0=py38h06a4308_0
  - _tflow_select=2.3.0=mkl
  - unicodedata2=15.1.0=py38h5eee18b_0
  - urllib3=2.2.2=pyhd8ed1ab_1
  - werkzeug=3.0.3=py38h06a4308_0
  - wheel=0.44.0=pyhd8ed1ab_0
  - wrapt=1.14.1=py38h5eee18b_0
  - xz=5.2.6=h166bdaf_0
  - yaml=0.2.5=h7b6447c_0
  - yarl=1.9.3=py38h5eee18b_0
  - zarr=2.17.1=pyhd8ed1ab_0
  - zipp=3.20.1=pyhd8ed1ab_0
  - zlib=1.2.13=h4ab18f5_6
  - zstandard=0.23.0=py38h62bed22_0
  - zstd=1.5.6=ha6fb4c9_0