Download

Note

If you're not using HiCCUPS, any of the below jars should work on your system. Otherwise, please download the jar corresponding to your version of CUDA

Please note that these jars are compiled from the source at the Juicebox repository

Juicer Tools requires Java: download Java here

Due to active development, bugs may be encountered. Please email us or create a github issue for these bugs and we will fix them ASAP.

Version 1.11.09

New flag added for specifying the genome ID separately from the required field (which can be a chrom.sizes file); use "-y genomeID"

      Juicer tools jar (CUDA 8.0)

Version 1.11.04

      Juicer tools jar (CUDA 8.0)

Version 1.10.10

      Juicer tools jar (CUDA 8.0)

Version 1.10.09

      Juicer tools jar (CUDA 8.0)

Version 1.9.9

      Juicer tools jar (CUDA 8.0)

Version 1.9.8

      Juicer tools jar (CUDA 8.0)

Version 1.8.9

      Juicer tools jar (CUDA 8.0)

Version 1.7.6

      Juicer tools jar (CUDA 8.0)

Version 1.7.5

      Juicer tools jar (CUDA 8 for Unix x64)

      Juicer tools jar (CUDA 8 for Unix PPC)

Version 1.6.2

      Juicer tools jar (CUDA 7.0)

      Juicer tools jar (CUDA 7.5)

      Juicer tools jar (CUDA 8 for Windows)

      Juicer tools jar (CUDA 8 for Unix)

Version 1.6.1

      Juicer tools jar (CUDA 7.0)

      Juicer tools jar (CUDA 7.5)

      Juicer tools jar (CUDA 8 for Windows)

      Juicer tools jar (CUDA 8 for Unix)

Version 1.5.2

      Juicer tools jar (CUDA 7.0)

      Juicer tools jar (CUDA 7.5)

      Juicer tools jar (CUDA 8 for Windows)

      Juicer tools jar (CUDA 8 for Unix)

Previous jars

Note that Juicer Tools used to be named Juicebox Tools.

August 23, 2016 Juicebox Tools CUDA 7.5