GPTCelltype for Scanpy

[xueweireally]

May I ask if it is possible to develop a version of GPTCelltype that supports Scanpy?"

[Starlitnightly]

Hi @xueweireally ,

We have added GPTCelltype in Python as outlined in our tutorial here.

Thank you!

Best regards

[cafferychen777]

Hi @xueweireally,

I'd like to mention that our mLLMCelltype framework also fully supports Scanpy! It provides a Python interface that seamlessly integrates with Scanpy workflows for cell type annotation.

You can find the implementation and documentation here: mLLMCelltype Github

The Python version offers multi-LLM consensus for more accurate annotations, with complete examples in the repository.

Best regards,
Caffery