-
Notifications
You must be signed in to change notification settings - Fork 0
Expand file tree
/
Copy pathestimate_error.html
More file actions
143 lines (121 loc) · 7.6 KB
/
Copy pathestimate_error.html
File metadata and controls
143 lines (121 loc) · 7.6 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
<!DOCTYPE html>
<html class="writer-html5" lang="en" data-content_root="./">
<head>
<meta charset="utf-8" /><meta name="viewport" content="width=device-width, initial-scale=1" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>Estimating error — gorder "1.5.0" documentation</title>
<link rel="stylesheet" type="text/css" href="_static/pygments.css?v=b86133f3" />
<link rel="stylesheet" type="text/css" href="_static/css/theme.css?v=e59714d7" />
<link rel="stylesheet" type="text/css" href="_static/graphviz.css?v=4ae1632d" />
<script src="_static/jquery.js?v=5d32c60e"></script>
<script src="_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
<script src="_static/documentation_options.js?v=d55844b1"></script>
<script src="_static/doctools.js?v=9bcbadda"></script>
<script src="_static/sphinx_highlight.js?v=dc90522c"></script>
<script src="_static/js/theme.js"></script>
<link rel="index" title="Index" href="genindex.html" />
<link rel="search" title="Search" href="search.html" />
<link rel="next" title="Order parameters for specific membrane region" href="geometry.html" />
<link rel="prev" title="Maps of order parameters" href="ordermap.html" />
</head>
<body class="wy-body-for-nav">
<div class="wy-grid-for-nav">
<nav data-toggle="wy-nav-shift" class="wy-nav-side">
<div class="wy-side-scroll">
<div class="wy-side-nav-search" >
<a href="index.html" class="icon icon-home">
gorder
</a>
<div role="search">
<form id="rtd-search-form" class="wy-form" action="search.html" method="get">
<input type="text" name="q" placeholder="Search docs" aria-label="Search docs" />
<input type="hidden" name="check_keywords" value="yes" />
<input type="hidden" name="area" value="default" />
</form>
</div>
</div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
<ul class="current">
<li class="toctree-l1"><a class="reference internal" href="introduction.html">Introduction</a></li>
<li class="toctree-l1"><a class="reference internal" href="installation.html">Installation</a></li>
<li class="toctree-l1"><a class="reference internal" href="gorder.html">Performing the analysis</a></li>
<li class="toctree-l1"><a class="reference internal" href="analysis_types.html">Analysis types</a></li>
<li class="toctree-l1"><a class="reference internal" href="leaflets.html">Order parameters for individual leaflets</a></li>
<li class="toctree-l1"><a class="reference internal" href="ordermap.html">Maps of order parameters</a></li>
<li class="toctree-l1 current"><a class="current reference internal" href="#">Estimating error</a><ul>
<li class="toctree-l2"><a class="reference internal" href="#gorder.estimate_error.EstimateError"><code class="docutils literal notranslate"><span class="pre">EstimateError</span></code></a></li>
</ul>
</li>
<li class="toctree-l1"><a class="reference internal" href="geometry.html">Order parameters for specific membrane region</a></li>
<li class="toctree-l1"><a class="reference internal" href="membrane_normal.html">Specifying membrane normal</a></li>
<li class="toctree-l1"><a class="reference internal" href="results.html">Accessing the results</a></li>
<li class="toctree-l1"><a class="reference internal" href="exceptions.html">Errors you can encounter</a></li>
<li class="toctree-l1"><a class="reference internal" href="examples.html">Examples</a></li>
</ul>
</div>
</div>
</nav>
<section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" >
<i data-toggle="wy-nav-top" class="fa fa-bars"></i>
<a href="index.html">gorder</a>
</nav>
<div class="wy-nav-content">
<div class="rst-content">
<div role="navigation" aria-label="Page navigation">
<ul class="wy-breadcrumbs">
<li><a href="index.html" class="icon icon-home" aria-label="Home"></a></li>
<li class="breadcrumb-item active">Estimating error</li>
<li class="wy-breadcrumbs-aside">
<a href="_sources/estimate_error.rst.txt" rel="nofollow"> View page source</a>
</li>
</ul>
<hr/>
</div>
<div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
<div itemprop="articleBody">
<section id="module-gorder.estimate_error">
<span id="estimating-error"></span><h1>Estimating error<a class="headerlink" href="#module-gorder.estimate_error" title="Link to this heading"></a></h1>
<dl class="py class">
<dt class="sig sig-object py" id="gorder.estimate_error.EstimateError">
<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">gorder.estimate_error.</span></span><span class="sig-name descname"><span class="pre">EstimateError</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">n_blocks</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">5</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">output_convergence</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#gorder.estimate_error.EstimateError" title="Link to this definition"></a></dt>
<dd><p>Parameters for estimating the error of the analysis.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters<span class="colon">:</span></dt>
<dd class="field-odd"><ul class="simple">
<li><p><strong>n_blocks</strong> (<em>int</em><em>, </em><em>default=5</em>) – Number of blocks to divide the trajectory for error estimation.
Must be at least 2. It is recommended not to modify this value to
artificially reduce error estimates.</p></li>
<li><p><strong>output_convergence</strong> (<em>Optional</em><em>[</em><em>str</em><em>]</em><em>, </em><em>default=None</em>) – Filename for writing convergence data. If omitted, convergence analysis
is still performed but results are not written into a file.</p></li>
</ul>
</dd>
<dt class="field-even">Raises<span class="colon">:</span></dt>
<dd class="field-even"><p><a class="reference internal" href="exceptions.html#gorder.exceptions.ConfigError" title="gorder.exceptions.ConfigError"><strong>ConfigError</strong></a> – If <cite>n_blocks</cite> is less than 2.</p>
</dd>
</dl>
</dd></dl>
</section>
</div>
</div>
<footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
<a href="ordermap.html" class="btn btn-neutral float-left" title="Maps of order parameters" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
<a href="geometry.html" class="btn btn-neutral float-right" title="Order parameters for specific membrane region" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
</div>
<hr/>
<div role="contentinfo">
<p>© Copyright 2025, Ladislav Bartos.</p>
</div>
Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
<a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
provided by <a href="https://readthedocs.org">Read the Docs</a>.
</footer>
</div>
</div>
</section>
</div>
<script>
jQuery(function () {
SphinxRtdTheme.Navigation.enable(true);
});
</script>
</body>
</html>