-
Notifications
You must be signed in to change notification settings - Fork 2
/
Copy pathturkunlp.bib
3509 lines (3022 loc) · 185 KB
/
turkunlp.bib
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
% This file was created with JabRef 2.10.
% Encoding: UTF-8
@inproceedings{kanerva-etal-2025-ocr,
title = {{OCR} Error Post-Correction with {LLMs} in Historical Documents: No Free Lunches},
author = {Kanerva, Jenna and Ledins, Cassandra and Käpyaho, Siiri and Ginter, Filip}
booktitle = {Proceedings of the Third Workshop on Resources and Representations for Under-Resourced Languages and Domains (RESOURCEFUL-2025)},
year = {2025},
note={To appear}
}
@article{erten-johansson2024linguistic,
author = {Selcen Erten-Johansson and Valtteri Skantsi and Sampo Pyysalo and Veronika Laippala},
title = {Linguistic variation beyond the Indo-European web: Analyzing Turkish web registers in TurCORE},
journal = {Register Studies},
volume = {6},
number = {1},
pages = {60-90},
year = {2024},
publisher = {John Benjamins Publishing Company},
doi = {10.1075/rs.24002.ert},
url = {https://doi.org/10.1075/rs.24002.ert}
}
@inproceedings{huang2024breakpoints,
volume = {21},
year = {2024},
isbn = {979-8-3315-1664-2},
title = {Breakpoints in Iterative Development and Interdisciplinary Collaboration of AI-Driven Automated Assessment},
url = {https://ieeexplore.ieee.org/document/10837673},
doi = {10.1109/ITHET61869.2024.10837673},
booktitle = {Proceedings of the International Conference on Information Technology Based Higher Education and Training},
author={Huang, Xiaoshan and Chang, Li-Hsin and Veermans, Koen and Ginter, Filip}
}
@inproceedings{luukkonen2024poro,
title={Poro 34B and the Blessing of Multilinguality},
author={Risto Luukkonen and Jonathan Burdge and Elaine Zosa and Aarne Talman and Ville Komulainen and Väinö Hatanpää and Peter Sarlin and Sampo Pyysalo},
booktitle={The Joint 25th Nordic Conference on Computational Linguistics and 11th Baltic Conference on Human Language Technologies},
year={2025},
note={To appear}
}
@inproceedings{zosa2024got,
title={Got Compute, but No Data: Lessons From Post-training a Finnish {LLM}},
author={Elaine Zosa and Ville Komulainen and Sampo Pyysalo},
booktitle={The Joint 25th Nordic Conference on Computational Linguistics and 11th Baltic Conference on Human Language Technologies},
year={2025},
note={To appear}
}
@inproceedings{nuutinen2025finnish,
title={Finnish {SQ}u{AD}: A Simple Approach to Machine Translation of Span Annotations},
author={Emil Nuutinen and Iiro Rastas and Filip Ginter},
booktitle={The Joint 25th Nordic Conference on Computational Linguistics and 11th Baltic Conference on Human Language Technologies},
year={2025},
note={To appear}
}
@inproceedings{henriksson2025finerwebbt,
title={FinerWeb-10{BT}: Refining training data with {LLM}-based line-level filtering},
author={Erik Henriksson and Otto Tarkka and Filip Ginter},
booktitle={The Joint 25th Nordic Conference on Computational Linguistics and 11th Baltic Conference on Human Language Technologies},
year={2025},
note={To appear}
}
@article{hellstrom-etal-2025-fromkeywords,
author={Saara Hellstr{\"o}m and Valtteri Skantsi and Anna Salmela and Veronika Laippala},
title={From Keywords to Key Embeddings - Contrasting French and Swedish Web Registers Using Multilingual Deep Learning},
year={2025},
journal={Corpus Linguistics and Linguistic Theory},
publisher={De Gruyter},
url = {https://doi.org/10.1515/cllt-2024-0070}
}
@InCollection{repo2024towards,
Title = {Towards Automatic Register Classification in Unrestricted Databases of Historical English},
Author = {Liina Repo and Brett Hashimoto and Aatu Liimatta and Lassi Saario and Tanja Säily and Iiro Tiihonen and Mikko Tolonen and Veronika Laippala},
Booktitle = {Linguistics across Disciplinary Borders : the March of Data},
Publisher = {Bloomsbury Publishing Plc.},
Year = {2024},
Address = {London},
Chapter = {4},
Editor = {Steven Coats and Veronika Laippala},
Pages = {97--126},
ISBN = {978-1-3503-6226-0},
Url = {https://www.bloomsbury.com/uk/linguistics-across-disciplinary-borders-9781350362284/}
}
@inproceedings{kupari-etal-2024-improving,
title = "Improving {L}atin Dependency Parsing by Combining Treebanks and Predictions",
author = "Kupari, Hanna-Mari and Henriksson, Erik and Laippala, Veronika and Kanerva, Jenna",
booktitle = "Proceedings of the 4th International Conference on Natural Language Processing for Digital Humanities (NLP4DH'2024)",
year = "2024",
publisher = "Association for Computational Linguistics",
url = "https://aclanthology.org/2024.nlp4dh-1.21",
doi = "10.18653/v1/2024.nlp4dh-1.21",
pages = "216--228",
}
@inproceedings{myntti-etal-2024-intersecting,
title = "Intersecting Register and Genre: Understanding the Contents of Web-Crawled Corpora",
author = "Myntti, Amanda and
Repo, Liina and
Freyermuth, Elian and
Kanner, Antti and
Laippala, Veronika and
Henriksson, Erik",
editor = {H{\"a}m{\"a}l{\"a}inen, Mika and
{\"O}hman, Emily and
Miyagawa, So and
Alnajjar, Khalid and
Bizzoni, Yuri},
booktitle = "Proceedings of the 4th International Conference on Natural Language Processing for Digital Humanities",
month = nov,
year = "2024",
address = "Miami, USA",
publisher = "Association for Computational Linguistics",
url = "https://aclanthology.org/2024.nlp4dh-1.38",
doi = "10.18653/v1/2024.nlp4dh-1.38",
pages = "386--397",
}
@inproceedings{laato2024karelians,
title = "Extracting social connections from {F}innish {K}arelian refugee interviews using {LLMs}",
author = {Laato, Joonatan and Kanerva, Jenna and Loehr, John and Lummaa, Virpi and Ginter, Filip},
booktitle={Proceedings of Fifth Conference on Computational Humanities Research (CHR'2024)},
url={https://ceur-ws.org/Vol-3834/paper52.pdf}
year={2024},
}
@inproceedings{tarkka-etal-2024-automated,
title = "Automated Emotion Annotation of {F}innish Parliamentary Speeches Using {GPT}-4",
author = "Tarkka, Otto and
Koljonen, Jaakko and
Korhonen, Markus and
Laine, Juuso and
Martiskainen, Kristian and
Elo, Kimmo and
Laippala, Veronika",
editor = "Fiser, Darja and
Eskevich, Maria and
Bordon, David",
booktitle = "Proceedings of the IV Workshop on Creating, Analysing, and Increasing Accessibility of Parliamentary Corpora (ParlaCLARIN) @ LREC-COLING 2024",
month = may,
year = "2024",
address = "Torino, Italia",
publisher = "ELRA and ICCL",
url = "https://aclanthology.org/2024.parlaclarin-1.11/",
pages = "70--76",
}
@inproceedings{eskelinen2024registerqa,
title = "Building Question-Answer Data Using Web Register Identification",
author = "Eskelinen, Anni and
Myntti, Amanda and
Henriksson, Erik and
Pyysalo, Sampo and
Laippala, Veronika",
editor = "Calzolari, Nicoletta and
Kan, Min-Yen and
Hoste, Veronique and
Lenci, Alessandro and
Sakti, Sakriani and
Xue, Nianwen",
booktitle = "Proceedings of the 2024 Joint International Conference on Computational Linguistics, Language Resources and Evaluation (LREC-COLING 2024)",
month = "may",
year = "2024",
address = "Torino, Italia",
publisher = "ELRA and ICCL",
url = "https://aclanthology.org/2024.lrec-main.234",
pages = "2595--2611",
}
@article{kanerva2024semanticsearch,
author = {Jenna Kanerva and Hanna Kitti and Li-Hsin Chang and Teemu Vahtola and Mathias Creutz and Filip Ginter},
title = {Semantic Search as Extractive Paraphrase Span Detection},
journal = {Language Resources and Evaluation},
year = {2024},
url = {https://link.springer.com/article/10.1007/s10579-023-09715-7}
}
@inproceedings{chang2024asagchatgpt,
title = {Automatic Short Answer Grading for Finnish with ChatGPT},
author = {Chang, Li-Hsin and Ginter, Filip},
booktitle = {Proceedings of the AAAI Conference on Artificial Intelligence},
year = {2024},
volume = {38},
url = {https://ojs.aaai.org/index.php/AAAI/article/view/30363},
doi = {10.1609/aaai.v38i21.30363},
number = {21},
month = {Mar.},
pages = {23173-23181}
}
@article{skantsi2023analyzing,
title={Analyzing the unrestricted web: The finnish corpus of online registers},
author={Skantsi, Valtteri and Laippala, Veronika},
journal={Nordic Journal of Linguistics},
pages={1--31},
publisher={Cambridge University Press},
year = {2024},
url = {https://www.cambridge.org/core/journals/nordic-journal-of-linguistics/article/analyzing-the-unrestricted-web-the-finnish-corpus-of-online-registers/BDCA0FE03ABD9087CC5652533880C8C0}
}
@inproceedings{muennighoff2023scaling,
title={Scaling Data-Constrained Language Models},
author={Niklas Muennighoff and Alexander M. Rush and Boaz Barak and Teven Le Scao and Aleksandra Piktus and Nouamane Tazi and Sampo Pyysalo and Thomas Wolf and Colin Raffel},
year={2023},
booktitle={NeurIPS},
}
@inproceedings{luukkonen-etal-2023-fingpt,
title = "{F}in{GPT}: Large Generative Models for a Small Language",
author = "Luukkonen, Risto and
Komulainen, Ville and
Luoma, Jouni and
Eskelinen, Anni and
Kanerva, Jenna and
Kupari, Hanna-Mari and
Ginter, Filip and
Laippala, Veronika and
Muennighoff, Niklas and
Piktus, Aleksandra and
Wang, Thomas and
Tazi, Nouamane and
Scao, Teven and
Wolf, Thomas and
Suominen, Osma and
Sairanen, Samuli and
Merioksa, Mikko and
Heinonen, Jyrki and
Vahtola, Aija and
Antao, Samuel and
Pyysalo, Sampo",
editor = "Bouamor, Houda and
Pino, Juan and
Bali, Kalika",
booktitle = "Proceedings of the 2023 Conference on Empirical Methods in Natural Language Processing",
year = "2023",
address = "Singapore",
publisher = "Association for Computational Linguistics",
url = "https://aclanthology.org/2023.emnlp-main.164",
doi = "10.18653/v1/2023.emnlp-main.164",
pages = "2710--2726",
}
@article{schram2023moin,
author = {Frederike Schram},
title = {Moin, Schietwedder, and Freely Phrased Sentences: The Commodified Use of Low German on Instagram},
journal = {Language@Internet},
volume = {21},
pages = {79-101},
year = {2023},
doi = {https://doi.org/10.14434/li.v21.37374 },
}
@article{repo2023foundingreg,
author = {Liina Repo and Brett Hashimoto and Veronika Laippala},
title = {In search of founding era registers: automatic modeling of registers from the corpus of Founding Era American English},
journal = {Digital Scholarship in the Humanities},
volume = {38},
number = {4},
pages = {1659-1677},
year = {2023},
doi = {10.1093/llc/fqad049},
url = {https://doi.org/10.1093/llc/fqad049},
}
@article{ristila2023parltopics,
author={Anna Ristil{\"a} and Kimmo Elo},
title={Observing political and societal changes in {Finnish} parliamentary speech data, 1980–2010, with topic modelling},
year={2023},
journal={Parliaments, Estates and Representation},
publisher={Routledge},
doi = {10.1080/02606755.2023.2213550},
url = {https://doi.org/10.1080/02606755.2023.2213550}
}
@inproceedings{eskelinen2023toxicity,
title={Toxicity Detection in {Finnish} Using Machine Translation},
author={Anni Eskelinen and Laura Silvala and Filip Ginter and Sampo Pyysalo and Veronika Laippala},
booktitle={The 24rd Nordic Conference on Computational Linguistics (NoDaLiDa 2023)},
year={2023},
url={https://openreview.net/forum?id=X5DCw7mXz4}
}
@inproceedings{bassignana2023multicrossre,
title={{Multi-CrossRE} A Multi-Lingual Multi-Domain Dataset for Relation Extraction},
author={Elisa Bassignana and Filip Ginter and Sampo Pyysalo and Rob van der Goot and Barbara Plank},
year={2023},
booktitle={Proceedings of The 24th Nordic Conference on Computational Linguistics (NoDaLiDa' 2023)}
}
@inproceedings{bassignana2023silver,
title={Silver Syntax Pre-training for Cross-Domain Relation Extraction},
author={Elisa Bassignana and Filip Ginter and Sampo Pyysalo and Rob van der Goot and Barbara Plank},
year={2023},
booktitle={Findings of the Association for Computational Linguistics: ACL 2023},
publisher={Association for Computational Linguistics}
}
@inproceedings{gehrmann-etal-2022-gemv2,
title = "{GEM}v2: Multilingual {NLG} Benchmarking in a Single Line of Code",
author = "Gehrmann, Sebastian and ManyCoauthors, Other and Kanerva, Jenna and Ginter, Filip and ManyCoauthors, Other and others",
booktitle = "Proceedings of the 2022 Conference on Empirical Methods in Natural Language Processing: System Demonstrations",
year = "2022",
publisher = "Association for Computational Linguistics",
url = "https://aclanthology.org/2022.emnlp-demos.27",
pages = "266--281"
}
@article{haris2023blockbuster,
author={Haris, Muhammad Junaid and Upreti, Aanchal and Kurtaran, Melih and Ginter, Filip and Lafond, Sebastian and Azimi Rashti, Sepinoud},
title={Identifying gender bias in blockbuster movies through the lens of machine learning},
year={2023},
journal={Humanities and social sciences communications},
}
@article{kanerva2023paraphrasejournal,
author={Jenna Kanerva and Filip Ginter and Li-Hsin Chang and Iiro Rastas and Valtteri Skantsi and Jemina Kilpel{\"a}inen and Hanna-Mari Kupari and Aurora Piirto and Jenna Saarni and Maija Sev{\'o}n and Otto Tarkka},
title={Towards Diverse and Contextually Anchored Paraphrase Modeling: A Dataset and Baselines for {Finnish}},
year={2023},
journal={Natural Language Engineering},
publisher={Cambridge University Press},
doi = {10.1017/S1351324923000086},
url = {https://doi.org/10.1017/S1351324923000086}
}
@inproceedings{ronnqvist-etal-2022-explaining,
title = "Explaining Classes through Stable Word Attributions",
author = {R{\"o}nnqvist, Samuel and
Kyr{\"o}l{\"a}inen, Aki-Juhani and
Myntti, Amanda and
Ginter, Filip and
Laippala, Veronika},
booktitle = "Findings of the Association for Computational Linguistics: ACL 2022",
month = "may",
year = "2022",
address = "Dublin, Ireland",
publisher = "Association for Computational Linguistics",
url = "https://aclanthology.org/2022.findings-acl.85",
doi = "10.18653/v1/2022.findings-acl.85",
pages = "1063--1074",
abstract = "Input saliency methods have recently become a popular tool for explaining predictions of deep learning models in NLP. Nevertheless, there has been little work investigating methods for aggregating prediction-level explanations to the class level, nor has a framework for evaluating such class explanations been established. We explore explanations based on XLM-R and the Integrated Gradients input attribution method, and propose 1) the Stable Attribution Class Explanation method (SACX) to extract keyword lists of classes in text classification tasks, and 2) a framework for the systematic evaluation of the keyword lists. We find that explanations of individual predictions are prone to noise, but that stable explanations can be effectively identified through repeated training and explanation. We evaluate on web register data and show that the class explanations are linguistically meaningful and distinguishing of the classes.",
}
@article{laippala2022corecorpus,
author={Veronika Laippala and Samuel R{\"o}nnqvist and Miika Oinonen and Aki-Juhani Kyr{\"o}l{\"a}inen and Anna Salmela and Douglas Biber and Jesse Egbert and Sampo Pyysalo},
title={Register identification from the unrestricted open Web using the Corpus of Online Registers of English},
year=2022,
journal={Language Resources and Evaluation},
doi={ https://doi.org/10.1007/s10579-022-09624-1}
}
@inproceedings{laippala-etal-2022-towards,
title = "Towards better structured and less noisy Web data: Oscar with Register annotations",
author = {Laippala, Veronika and
Salmela, Anna and
R{\"o}nnqvist, Samuel and
Aji, Alham Fikri and
Chang, Li-Hsin and
Dhifallah, Asma and
Goulart, Larissa and
Kortelainen, Henna and
P{\`a}mies, Marc and
Prina Dutra, Deise and
Skantsi, Valtteri and
Sutawika, Lintang and
Pyysalo, Sampo},
booktitle = "Proceedings of the Eighth Workshop on Noisy User-generated Text (W-NUT 2022)",
month = "oct",
year = "2022",
address = "Gyeongju, Republic of Korea",
publisher = "Association for Computational Linguistics",
url = "https://aclanthology.org/2022.wnut-1.23",
pages = "215--221",
abstract = {Web-crawled datasets are known to be noisy, as they feature a wide range of language use covering both user-generated and professionally edited content as well as noise originating from the crawling process. This article presents one solution to reduce this noise by using automatic register (genre) identification -whether the texts are, e.g., forum discussions, lyrical or how-to pages. We apply the multilingual register identification model by R{\"o}nnqvist et al. (2021) and label the widely used Oscar dataset. Additionally, we evaluate the model against eight new languages, showing that the performance is comparable to previous findings on a restricted set of languages. Finally, we present and apply a machine learning method for further cleaning text files originating from Web crawls from remains of boilerplate and other elements not belonging to the main text of the Web page. The register labeled and cleaned dataset covers 351 million documents in 14 languages and is available at https://huggingface.co/datasets/TurkuNLP/register{\_}oscar.},
}
@inproceedings{zhang2022,
author = "Jinbin Zhang and Ryan, {Yann Ciar{\'a}n} and Iiro Rastas and Filip Ginter and Mikko Tolonen and Rohit Babbar",
title = "Detecting Sequential Genre Change in Eighteenth-Century Texts",
year = "2022",
publisher = "CEUR-WS.org",
pages = "243--255",
editor = "Karsdorp, Folgert and Lassche, Alie and Nielbo, Kristoffer",
booktitle = "Proceedings of the Computational Humanities Research Conference 2022",
url = "https://ceur-ws.org/Vol-3290/short_paper2630.pdf"
}
@article{Salmi_Kanerva_Kiiskinen_Ginter_2022,
author={Salmi, Hannu and Kanerva, Jenna and Kiiskinen, Harri and Ginter, Filip},
title={Paimen, piika ja emäntä: Arvot ja ammatit suomalaisessa näytelmäelokuvassa 1907–2017},
volume={35},
url={https://journal.fi/lahikuva/article/view/125666},
DOI={10.23994/lk.125666},
number={4},
journal={Lähikuva – audiovisuaalisen kulttuurin tieteellinen julkaisu},
year={2022}, month={12}, pages={8–18}}
@article{paasikivi2022cholera,
author = {Sofia Paasikivi and Hannu Salmi and Aleksi Vesanto and Filip Ginter},
title = {Infectious Media: Cholera and the Circulation of Texts in the {Finnish} Press, 1860–1920},
journal = {Media History},
pages = {1-22},
year = {2022},
publisher = {Routledge},
doi = {10.1080/13688804.2022.2054408},
URL = {https://doi.org/10.1080/13688804.2022.2054408},
}
@inproceedings{chang2022towards-automatic-short,
title={Towards Automatic Short Answer Assessment for {Finnish} as a Paraphrase Retrieval},
author={Chang, Li-Hsin and Kanerva, Jenna and Ginter, Filip},
booktitle = {Proceedings of the 17th Workshop on Innovative Use of NLP for Building Educational Applications},
year = {2022},
publisher = {Association for Computational Linguistics},
url = {https://aclanthology.org/2022.bea-1.30/}
}
@PhdThesis{FarrokhMehryaryPhD,
Title = {Optimizing text mining methods for improving biomedical natural language processing},
Author = {Farrokh Mehryary},
School = {University of Turku},
Year = {2022},
Timestamp = {2022-02-04},
Month = {February},
Address = {Turku, Finland},
url = {https://urn.fi/URN:ISBN:978-951-29-8744-3},
issn={2736-9684}
}
@inproceedings{ginter2022movie2year,
title= {{Deep Learning} and Film History: {M}odel explanation techniques in the analysis of temporality in {Finnish} fiction film metadata},
author = {Ginter, Filip and Kiiskinen, Harri and Kanerva, Jenna and Chang, Li-Hsin and Salmi, Hannu},
booktitle = {Proceedings of the 6th Digital Humanities in the Nordic and Baltic Countries Conference (DHNB 2022)},
year={2022}
}
@inproceedings{rastas-2022-eccobert,
title= {Explainable Publication Year Prediction of Eighteenth Century Texts with the {BERT} Model},
author = {Rastas, Iiro and Ryan, Yann and Tiihonen, Iiro and Qaraei, Mohammadreza and Repo, Liina and Babbar, Rohit and M{\"a}kel{\"a}, Eetu and Tolonen, Mikko and Ginter, Filip},
booktitle = {Proceedings of the 3rd International Workshop on Computational Approaches to Historical Language Change (LChange 2022)},
year={2022}
}
@inproceedings{kanerva-2022-ood,
title = "Out-of-Domain Evaluation of {Finnish} Dependency Parsing",
author = {Kanerva, Jenna and Ginter, Filip},
booktitle = "Proceedings of the 13th International Conference on Language Resources and Evaluation (LREC'22)",
year = "2022",
pages = "1114‑-1124",
url = "http://www.lrec-conf.org/proceedings/lrec2022/pdf/2022.lrec-1.120.pdf"
}
@inproceedings{Robertson2022TallVocabL2Fi,
title = {{TallVocabL2Fi}: {A}n Extensive Mapping of 15 {Finnish} {L}2 Learners’ Vocabulary},
author = {Robertson, Frankie and Chang, Li-Hsin and Söyrinki, Sini},
booktitle = "Proceedings of the 13th International Conference on Language Resources and Evaluation (LREC'22)",
year = "2022",
pages = "6377--6386",
url = "http://www.lrec-conf.org/proceedings/lrec2022/pdf/2022.lrec-1.685.pdf"
}
@article{Laippala2021ExploringTR,
title={Exploring the role of lexis and grammar for the stable identification of register in an unrestricted corpus of web documents},
author={Veronika Laippala and Jesse Egbert and Douglas Biber and Aki-Juhani Kyr{\"o}l{\"a}inen},
journal={Language Resources and Evaluation},
year={2021},
volume={55},
pages={757 - 788}
}
@inproceedings{ronnqvist-etal-2021-multilingual,
title = "Multilingual and Zero-Shot is Closing in on Monolingual Web Register Classification",
author = {R{\"o}nnqvist, Samuel and
Skantsi, Valtteri and
Oinonen, Miika and
Laippala, Veronika},
booktitle = "Proceedings of the 23rd Nordic Conference on Computational Linguistics (NoDaLiDa)",
month = "may",
year = "2021",
address = "Reykjavik, Iceland (Online)",
publisher = {Link{\"o}ping University Electronic Press, Sweden},
url = "https://aclanthology.org/2021.nodalida-main.16",
pages = "157--165",
abstract = "This article studies register classification of documents from the unrestricted web, such as news articles or opinion blogs, in a multilingual setting, exploring both the benefit of training on multiple languages and the capabilities for zero-shot cross-lingual transfer. While the wide range of linguistic variation found on the web poses challenges for register classification, recent studies have shown that good levels of cross-lingual transfer from the extensive English CORE corpus to other languages can be achieved. In this study, we show that training on multiple languages 1) benefits languages with limited amounts of register-annotated data, 2) on average achieves performance on par with monolingual models, and 3) greatly improves upon previous zero-shot results in {Finnish}, French and Swedish. The best results are achieved with the multilingual XLM-R model. As data, we use the CORE corpus series featuring register annotated data from the unrestricted web.",
}
@article{hakala2019neural,
title={Neural network and random forest models in protein function prediction},
author={Hakala, Kai and Kaewphan, Suwisa and Bj{\"o}rne, Jari and Mehryary, Farrokh and Moen, Hans and Tolvanen, Martti and Salakoski, Tapio and Ginter, Filip},
journal={IEEE/ACM Transactions on Computational Biology and Bioinformatics},
year={2020},
doi={10.1109/TCBB.2020.3044230}
}
@inproceedings{droganova-etal-2018-parse,
title = {{Parse Me if You Can: Artificial Treebanks for Parsing Experiments on Elliptical Constructions}},
author = {Droganova, Kira and Zeman, Daniel and Kanerva, Jenna and Ginter, Filip},
booktitle = {Proceedings of the Eleventh International Conference on Language Resources and Evaluation ({LREC} 2018)},
year = {2018},
address = {Miyazaki, Japan},
publisher = {European Language Resources Association (ELRA)},
url = {https://aclanthology.org/L18-1290}
}
@article{kanerva2020dependency,
title={Dependency parsing of biomedical text with {BERT}},
author={Kanerva, Jenna and Ginter, Filip and Pyysalo, Sampo},
journal={BMC Bioinformatics},
volume={21},
number={23},
pages={1--12},
year={2020},
publisher={Springer},
url={https://doi.org/10.1186/s12859-020-03905-8},
}
@inproceedings{laippala2020web,
title={From Web Crawl to Clean Register-Annotated Corpora},
author={Laippala, Veronika and R{\"o}nnqvist, Samuel and Hellstr{\"o}m, Saara and Luotolahti, Juhani and Repo, Liina and Salmela, Anna and Skantsi, Valtteri and Pyysalo, Sampo},
booktitle={Proceedings of the 12th Web as Corpus Workshop},
pages={14--22},
year={2020}
}
@inproceedings{luoma2020broad,
title={A broad-coverage corpus for {Finnish} named entity recognition},
author={Luoma, Jouni and Oinonen, Miika and Pyyk{\"o}nen, Maria and Laippala, Veronika and Pyysalo, Sampo},
booktitle={Proceedings of The 12th Language Resources and Evaluation Conference},
pages={4615--4624},
year={2020}
}
@article{moen2020assisting,
title={Assisting nurses in care documentation: from automated sentence classification to coherent document structures with subject headings},
author={Moen, Hans and Hakala, Kai and Peltonen, Laura-Maria and Matinolli, Hanna-Maria and Suhonen, Henry and Terho, Kirsi and Danielsson-Ojala, Riitta and Valta, Maija and Ginter, Filip and Salakoski, Tapio and others},
journal={Journal of Biomedical Semantics},
volume={11},
number={1},
pages={1--12},
year={2020},
publisher={Springer}
}
@article{paulin2020changing,
title={Changing role of EMS--analyses of non-conveyed and conveyed patients in Finland},
author={Paulin, Jani and Kurola, Jouni and Salanter{\"a}, Sanna and Moen, Hans and Guragain, Nischal and Koivisto, Mari and K{\"a}yhk{\"o}, Niina and Aaltonen, Venla and Iirola, Timo},
journal={Scandinavian Journal of Trauma, Resuscitation and Emergency Medicine},
volume={28},
number={1},
pages={1--14},
year={2020},
publisher={BioMed Central}
}
@article{peltonen2020exploring,
title={Exploring Unsupervised Query Paraphrasing to Identify Relevant Search Phrases for a Literature Review},
author={Peltonen, Laura-Maria and Tommila, Miretta and Moen, Hans},
journal={Studies in Health Technology and Informatics},
volume={272},
pages={429--432},
year={2020}
}
@article{uronen2020towards,
title={Towards automated detection of psychosocial risk factors with text mining},
author={Uronen, L and Moen, H and Teperi, S and Martimo, KP and Hartiala, J and Salanter{\"a}, S},
journal={Occupational Medicine},
volume={70},
number={3},
pages={203--206},
year={2020},
publisher={Oxford University Press UK}
}
@article{salmi2020reuse,
author = { Hannu Salmi and Petri Paju and Heli Rantala and Asko Nivala and Aleksi Vesanto and Filip Ginter },
title = {The reuse of texts in {Finnish} newspapers and journals, 1771–1920: A digital humanities perspective},
journal = {Historical Methods: A Journal of Quantitative and Interdisciplinary History},
volume = {0},
number = {0},
pages = {1-15},
year = {2020},
publisher = {Routledge},
doi = {10.1080/01615440.2020.1803166},
url = {https://doi.org/10.1080/01615440.2020.1803166}
}
@inproceedings{kanerva-etal-2020-turku,
title = {{T}urku Enhanced Parser Pipeline: From Raw Text to Enhanced Graphs in the {IWPT} 2020 Shared Task},
author = {Kanerva, Jenna and Ginter, Filip and Pyysalo, Sampo},
booktitle = {Proceedings of the 16th International Conference on Parsing Technologies and the IWPT 2020 Shared Task on Parsing into Enhanced Universal Dependencies},
month = {July},
year = {2020},
address = {Online},
publisher = {Association for Computational Linguistics},
url = {https://www.aclweb.org/anthology/2020.iwpt-1.17},
pages = {162--173},
}
@article{kanerva2020lemmatizer,
title={{Universal Lemmatizer}: A Sequence to Sequence Model for Lemmatizing {Universal Dependencies} Treebanks},
author={Kanerva, Jenna and Ginter, Filip and Salakoski, Tapio},
year={2020},
journal={Natural Language Engineering},
publisher={Cambridge University Press},
DOI={10.1017/S1351324920000224},
pages={1--30},
url={http://dx.doi.org/10.1017/S1351324920000224}
}
@article{moen2020supporting,
title={Supporting the use of standardized nursing terminologies with automatic subject heading prediction: a comparison of sentence-level text classification methods},
author={Moen, Hans and Hakala, Kai and Peltonen, Laura-Maria and Suhonen, Henry and Ginter, Filip and Salakoski, Tapio and Salanter{\"a}, Sanna},
journal={Journal of the American Medical Informatics Association},
volume={27},
number={1},
pages={81--88},
year={2020},
publisher={Oxford University Press}
}
@inproceedings{chang2021quantitative,
title={Quantitative Evaluation of Alternative Translations in a Corpus of Highly Dissimilar {Finnish} Paraphrases},
author={Chang, Li-Hsin and Pyysalo, Sampo and Kanerva, Jenna and Ginter, Filip},
year={2021},
booktitle={Proceedings for the First Workshop on Modelling Translation: Translatology in the Digital Age},
url={https://www.aclweb.org/anthology/2021.motra-1.11.pdf}
}
@inproceedings{chang2021deep,
title={Deep learning for sentence clustering in essay grading support},
author={Chang, Li-Hsin and Rastas, Iiro and Pyysalo, Sampo and Ginter, Filip},
year={2021},
booktitle={Proceedings of the 14th International Conference on Educational Data Mining (EDM 2021)},
}
@inproceedings{chang2021towards,
title={Towards Bilingually Competent Deep Language Modeling},
author={Chang, Li-Hsin},
year={2021},
booktitle={Proceedings of the ESSLLI Student Session 2021},
}
@inproceedings{multilingualregisters2019,
title={Toward Multilingual Identification of Online Registers},
author={Laippala, Veronika and Kyllönen, Roosa and Egbert, Jesse and Biber, Douglas and Pyysalo, Sampo},
year={2019},
booktitle={Proceedings of the 22nd Nordic Conference on Computational Linguistics (NoDaLiDa’19)},
}
@inproceedings{baumgartner2019craft,
title={{CRAFT} Shared Tasks 2019 Overview --- Integrated Structure, Semantics, and Coreference},
author={Baumgartner, William and Bada, Michael and Pyysalo, Sampo and Ciosici, Manuel R. and Hailu, Negacy and Pielke-Lombardo, Harrison and Regan, Michael and Hunter, Lawrence},
year={2019},
booktitle={Proceedings of the BioNLP Open Shared Tasks 2019}
}
@inproceedings{hakala2019biomedical,
title={Biomedical Named Entity Recognition with Multilingual {BERT}},
author={Hakala, Kai and Pyysalo, Sampo},
year={2019},
booktitle={Proceedings of the BioNLP Open Shared Tasks 2019}
}
@inproceedings{thang2019neural,
title={Neural Dependency Parsing of Biomedical Text: {TurkuNLP} entry in the {CRAFT} Structural Annotation Task},
author={Ngo, Thang Minh and Kanerva, Jenna and Ginter, Filip and Pyysalo, Sampo},
year={2019},
booktitle={Proceedings of the BioNLP Open Shared Tasks 2019}
}
@article{zhou2019cafa,
title={The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens},
author={Zhou, Naihui and Jiang, Yuxiang and Bergquist, Timothy R and Lee, Alexandra J and Kacsoh, Balint Z and Crocker, Alex W and Lewis, Kimberley A and Georghiou, George and Nguyen, Huy N and Hamid, Md Nafiz and others},
journal={Genome biology},
volume={20},
number={1},
pages={1--23},
year={2019},
publisher={BioMed Central}
}
@inproceedings{moen2019nodalida,
title={An Unsupervised Query Rewriting Approach Using N-gram Co-occurrence Statistics to Find Similar Phrases in Large Text Corpora},
author={Moen, Hans and Peltonen, Laura-Maria and Suhonen, Henry and Matinolli, Hanna-Maria and Mieronkoski, Riitta and Telen, Kirsi and Terho, Kirsi and Salakoski, Tapio and Salanterä, Sanna},
year={2019},
booktitle={Proceedings of the 22nd Nordic Conference on Computational Linguistics (NoDaLiDa’19)},
}
@inproceedings{moen2019medinfo,
title={Unsupervised Phrase-Level Query Rewriting for Assisting Search in Clinical Free Text},
author={Moen, Hans and Peltonen, Laura-Maria and Suhonen, Henry and Koivumäki, Mikko and Salakoski, Tapio and Salanterä, Sanna},
year={2019},
booktitle={Proceedings of the 17th World Congress on Medical and Health Informatics (MedInfo’19)},
}
@article{vikstrom2018,
title={Secondary use of electronic health records: Availability aspects in two Nordic countries},
author={Vikström, Antti and Moen, Hans and Moosavi, Sanaz Rahimi and Salakoski, Tapio and Salanterä, Sanna},
year={2018},
journal={Health Information Management Journal}
}
@article{rantanen2019banks,
title={Classifying Online Corporate Reputation with Machine Learning: A Study in the Banking Domain},
author={Rantanen, Anette and Salminen, Joni and Ginter, Filip and Jansen, Bernard},
year={2019},
journal={Internet Research}
}
@inproceedings{kanerva2019newsgen,
Title = {Template-free Data-to-Text Generation of {Finnish} Sports News},
Author = {Jenna Kanerva and Samuel R{\"o}nnqvist and Riina Kekki and Tapio Salakoski and Filip Ginter},
booktitle = {Proceedings of the 22nd Nordic Conference on Computational Linguistics (NoDaLiDa’19)},
year={2019}
}
@inproceedings{ronnqvist2019bert,
Title = {Is Multilingual {BERT} Fluent in Language Generation?},
Author = {Samuel R{\"o}nnqvist and Jenna Kanerva and Tapio Salakoski and Filip Ginter},
booktitle = {Proceedings of the 1st NLPL Workshop on Deep Learning for Natural Language Processing},
year={2019}
}
@InProceedings{airola2012ranking,
Title = {Machine Learning and Performance Estimation Methods for Ranking Problems},
Author = {Airola, Antti},
Booktitle = {Proceedings of the Federated Computer Science Event},
Year = {2012},
Editor = {Tarkoma, Sasu and K\"{a}m\"{a}r\"{a}inen, Joni-Kristian and Pahikkala, Tapio},
Pages = {8--14},
Publisher = {Unigrafia Oy},
Owner = {ajairo},
Timestamp = {2012.11.06}
}
@PhdThesis{airola2011phd,
Title = {Kernel-Based Ranking: Methods for Learning and Performance Estimation},
Author = {Airola, Antti},
School = {Turku Centre for Computer Science (TUCS)},
Year = {2011},
Owner = {ajairo},
Timestamp = {2012.11.06}
}
@InProceedings{airola2010permutation,
Title = {Applying permutation tests for assessing the statistical significance of wrapper based feature selection},
Author = {Airola, Antti and Pahikkala, Tapio and Boberg, Jorma and Salakoski, Tapio},
Booktitle = {Proceedings of The Ninth International Conference on Machine Learning and Applications (ICMLA'10)},
Year = {2010},
Editor = {Draghici, Sorin and Khoshgoftaar, Taghi M. and Palade, Vasile and Pedrycz, Witold and Wani, M. Arif and Zhu, Xingquan},
Pages = {989--994},
Publisher = {IEEE},
Url = {http://dx.doi.org/10.1109/ICMLA.2010.158}
}
@InProceedings{airola2010largescale,
Title = {Large scale training methods for linear {RankRLS}},
Author = {Airola, Antti and Pahikkala, Tapio and Salakoski, Tapio},
Booktitle = {Proceedings of the {ECML/PKDD}-Workshop on Preference Learning {(PL-10)}},
Year = {2010},
Editor = {Eyke H{\"u}llermeier and Johannes F{\"u}rnkranz},
Url = {www.ke.tu-darmstadt.de/events/PL-10/papers/11-Airola.pdf}
}
@InProceedings{airola2011improved,
Title = {An Improved Training Algorithm for the Linear Ranking Support Vector Machine},
Author = {Antti Airola and Tapio Pahikkala and Tapio Salakoski},
Booktitle = {Proceedings of the 21st International Conference on Artificial Neural Networks (ICANN 2011)},
Year = {2011},
Editor = {Timo Honkela and Wlodzislaw Duch and Mark A. Girolami and Samuel Kaski},
Pages = {134-141},
Publisher = {Springer},
Series = {Lecture Notes in Computer Science},
Volume = {6791},
Url = {http://dx.doi.org/10.1007/978-3-642-21735-7_17}
}
@Article{airola2011nystromcv,
Title = {On learning and cross-validation with decomposed {N}ystr{\"o}m approximation of kernel matrix},
Author = {Airola, Antti and Pahikkala, Tapio and Salakoski, Tapio},
Journal = {Neural Processing Letters},
Year = {2011},
Month = {February},
Number = {1},
Pages = {17--30},
Volume = {33},
Doi = {10.1007/s11063-010-9159-4},
Url = {http://dx.doi.org/doi:10.1007/s11063-010-9159-4}
}
@Article{airola2011ranksvm,
Title = {Training linear ranking {SVMs} in linearithmic time using red-black trees},
Author = {Airola, Antti and Pahikkala, Tapio and Salakoski, Tapio},
Journal = {Pattern Recognition Letters},
Year = {2011},
Month = {July},
Number = {9},
Pages = {1328--1336},
Volume = {32},
Url = {http://dx.doi.org/doi:10.1016/j.patrec.2011.03.014}
}
@InCollection{airola2010comparison,
Title = {A comparison of {AUC} estimators in small-sample studies},
Author = {Airola, Antti and Pahikkala, Tapio and Waegeman, Willem and De Baets, Bernard and Salakoski, Tapio},
Booktitle = {JMLR Workshop and Conference Proceedings: Machine Learning in Systems Biology},
Year = {2010},
Editor = {D\v{z}eroski, Sa\v{s}o and Geurts, Pierre and Rousu, Juho},
Pages = {3--13},
File = {http://jmlr.csail.mit.edu/proceedings/papers/v8/airola10a/airola10a.pdf:PDF}
}
@InCollection{airola2009comparison,
Title = {A comparison of {AUC} estimators in small-sample studies},
Author = {Airola, Antti and Pahikkala, Tapio and Waegeman, Willem and De Baets, Bernard and Salakoski, Tapio},
Booktitle = {Proceedings of the Third International Workshop on Machine Learning in Systems Biology (MLSB'09)},
Publisher = {Helsinki University Printing House},
Year = {2009},
Address = {Helsinki, Finland},
Editor = {D\v{z}eroski, Sa\v{s}o and Geurts, Pierre and Rousu, Juho},
Pages = {15--23},
File = {:http\://www.tucs.fi/publications/attachment.php?fname=inpAiPaWaDeSa09a.full.pdf:PDF}
}
@Article{airola2011experimental,
Title = {An experimental comparison of cross-validation techniques for estimating the area under the {ROC} curve},
Author = {Airola, Antti and Pahikkala, Tapio and Waegeman, Willem and De Baets, Bernard and Salakoski, Tapio},
Journal = {Computational Statistics \& Data Analysis},
Year = {2011},
Month = {April},
Number = {4},
Pages = {1828--1844},
Volume = {55},
Doi = {10.1016/j.csda.2010.11.018 },
Url = {http://dx.doi.org/10.1016/j.csda.2010.11.018 }
}
@InProceedings{airola08bionlp,
Title = {A Graph Kernel for Protein-Protein Interaction Extraction},
Author = {Airola, Antti and Pyysalo, Sampo and Bj{\"{o}}rne, Jari and Pahikkala, Tapio and Ginter, Filip and Salakoski, Tapio},
Booktitle = {Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing (BioNLP'08)},
Year = {2008},
Pages = {1--9},
Publisher = {Association for Computational Linguistics},
File = {W08-0601.pdf:http\://aclweb.org/anthology-new/W/W08/W08-0601.pdf:PDF}
}
@Article{airola08allpathsbmc,
Title = {All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning},
Author = {Airola, Antti and Pyysalo, Sampo and Bj\"{o}rne, Jari and Pahikkala, Tapio and Ginter, Filip and Salakoski, Tapio },
Journal = {BMC Bioinformatics},
Year = {2008},
Volume = {9 Suppl 11}
}
@Article{aittokallio2007inspiratory,
Title = {Inspiratory Flow Shape Clustering: An Automated Method to Monitor Upper Airway Performance During Sleep},
Author = {Tero Aittokallio and Jani S. Malminen and Tapio Pahikkala and Olli Polo and Olli Nevalainen},
Journal = {Computer Methods and Programs in Biomedicine},
Year = {2007},
Month = {Jan},
Number = {1},
Pages = {8--18},
Volume = {85},
Doi = {10.1016/j.cmpb.2006.09.012},
Url = {http://dx.doi.org/10.1016/j.cmpb.2006.09.012}
}
@Article{aittokallio2003electrophoretic,
Title = {Electrophoretic Signal Comparison Applied to mRNA Differential Display Analysis},
Author = {Aittokallio, Tero and Pahikkala, Tapio and Ojala, Pekka and Nevalainen, Timo J. and Nevalainen, Olli},
Journal = {BioTechniques},
Year = {2003},
Month = {Jan},
Number = {1},
Pages = {116-122},
Volume = {34}
}
@PhdThesis{bjorne2014biomedical,
Title = {Biomedical Event Extraction with Machine Learning},
Author = {Bj{\"o}rne, Jari},
School = {TUCS Dissertations},
Year = {2014}
}
@InProceedings{bjorne2013analyzing,
Title = {Analyzing the {Japanese Toxicogenomics Project Dataset} with {SVM} and {RLS} Classifiers},
Author = {Bj{\"o}rne, Jari and Airola, Antti and Pahikkala, Tapio and Salakoski, Tapio},
Booktitle = {13th Annual International Conference on Critical Assessment of Massive Data Analysis (CAMDA 2013)},
Year = {2013}
}
@InProceedings{bjorne2013uturku,
Title = {{UTurku}: Drug Named Entity Recognition and Drug-Drug Interaction Extraction Using {SVM} Classification and Domain Knowledge},
Author = {Bj{\"o}rne, Jari and Kaewphan, Suwisa and Salakoski, Tapio},
Booktitle = {Second Joint Conference on Lexical and Computational Semantics (*SEM), Volume 2: Proceedings of the Seventh International Workshop on Semantic Evaluation (SemEval 2013)},
Year = {2013},
Organization = {Association for Computational Linguistics},
Pages = {651--659}
}
@InProceedings{bjorne08how,
Title = {How Complex are Complex Protein-protein Interactions?},
Author = {Jari Bj{\"o}rne and Sampo Pyysalo and Filip Ginter and Tapio Salakoski},
Booktitle = {Proceedings of the Third International Symposium on Semantic Mining in Biomedicine (SMBM 2008), Turku, Finland},
Year = {2008},
Editor = {Tapio Salakoski and Dietrich Rebholz-Schuhmann and Sampo Pyysalo},
Pages = {125--128},
Publisher = {Turku Centre for Computer Science (TUCS)},
File = {smbmpaper_17.pdf:http\://mars.cs.utu.fi/smbm2008/files/smbm2008proceedings/smbmpaper_17.pdf:PDF}
}
@Article{bjornecancer,
Title = {Cancer Progression Classification for Mutation Analysis},
Author = {Bj{\"o}rne, Jari and Salakoski, Tapio},
Journal = {The 14th Annual International Conference On Critical Assessment of Massive Data Analysis (CAMDA)},
Year = {2015}
}
@InProceedings{bjorne2013tees,
Title = {{TEES 2.1}: Automated annotation scheme learning in the BioNLP 2013 Shared Task},
Author = {Bj{\"o}rne, Jari and Salakoski, Tapio},
Booktitle = {Proceedings of the BioNLP Shared Task 2013 Workshop},
Year = {2013},
Organization = {Association for Computational Linguistics},
Pages = {16--25}
}
@InProceedings{bjorne2011ddi,
Title = {Drug-Drug Interaction Extraction from Biomedical Texts with SVM and RLS Classifiers},
Author = {Bj\"{o}rne, Jari and Airola, Antti and Pahikkala, Tapio and Salakoski, Tapio},
Booktitle = {Proceedings of the First Challenge task on Drug-Drug Interaction Extraction (DDIExtraction 2011)},
Year = {2011},
Address = {Huelva, Spain},
Month = {August},
Pages = {35--42},
Publisher = {CEUR Workshop Proceedings},
Url = {http://ceur-ws.org/Vol-761/paper4.pdf}
}
@InProceedings{bjorne09learning,
Title = {Learning to Extract Biological Event and Relation Graphs},
Author = {Bj\"{o}rne, Jari and Ginter, Filip and Heimonen, Juho and Pyysalo, Sampo and Salakoski, Tapio},
Booktitle = {Proceedings of NODALIDA'09, Odense, Denmark},
Year = {2009},
Editor = {Jokinen, Kristiina and Bick, Eckhard},
Pages = {18--25},
File = {paper40.pdf:http\://dspace.utlib.ee/dspace/bitstream/10062/9547/1/paper40.pdf:PDF}
}
@Article{bjorne2010complex,
Title = {Complex Event Extraction at {PubMed} Scale},
Author = {Bj\"{o}rne, Jari and Ginter, Filip and Pyysalo, Sampo and Tsujii, Jun'ichi and Salakoski, Tapio},
Journal = {Bioinformatics (ISMB'2010 proceedings volume)},
Year = {2010},
Pages = {i382--i390},
Volume = {26},
Owner = {ginter},
Timestamp = {2010.04.16},
Url = {http://bioinformatics.oxfordjournals.org/cgi/content/full/btq180?ijkey=41vpyrHIQkfr2dP\&keytype=ref}
}
@InProceedings{bjorne2010scalingup,
Title = {Scaling up Biomedical Event Extraction to the Entire {PubMed}},