CI #29

	name: CI

	on:
	push:
	branches: [ main ]
	pull_request:
	branches: [ main ]
	schedule:
	- cron: "0 0 * * 0"

	jobs:
	lint:
	name: Pylint
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: ["3.10"]

	steps:
	- uses: actions/checkout@v4

	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v3
	with:
	python-version: ${{ matrix.python-version }}

	- name: Install system dependencies (for pycurl, optional)
	run: \|
	sudo apt-get update
	sudo apt-get install -y build-essential libcurl4-openssl-dev libssl-dev libxml2-dev libxslt1-dev

	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install -r requirements-dev.txt
	# pip install -e .

	- name: Analysing the code with pylint
	run: \|
	pylint --disable=C,R,W genome_profiler

	bioconda:
	name: Bioconda Recipe Test
	needs: lint
	runs-on: ubuntu-latest

	steps:
	- name: Checkout repo
	uses: actions/checkout@v4

	- name: Show bioconda-utils version
	run: \|
	docker run --rm \
	-v "${{ github.workspace }}":/work \
	-w /work/bioconda \
	quay.io/bioconda/bioconda-utils-build-env:latest \
	bioconda-utils --version

	- name: Lint recipe (Bioconda style)
	run: \|
	docker run --rm \
	-v "${{ github.workspace }}":/work \
	-w /work/bioconda \
	quay.io/bioconda/bioconda-utils-build-env:latest \
	bioconda-utils lint recipes config.yml \
	--packages genome_profiler

	- name: Build & test recipe (Lightweight Bioconda style)
	run: \|
	docker run --rm \
	-v "$PWD":/work \
	-w /work/bioconda \
	quay.io/bioconda/bioconda-utils-build-env:latest \
	conda build recipes/genome_profiler \
	--no-anaconda-upload \
	--no-test

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