Main tool: spestimator
Code repository: https://github.com/erinyoung/Spestimator
Additional tools:
- list: blast+
Basic information on how to use this tool:
- executable: spestimator
- help: -h
- version: -v
- description: |
Spestimator is a lightweight Python command-line tool designed to quickly identify bacterial species from input FASTA sequences (contigs or reads) and automatically retrieve their corresponding reference genomes from NCBI RefSeq.
Full documentation: https://github.com/erinyoung/Spestimator
spestimator -i *.fna -o testing.csv --download-genomes genomes