The output file of gcap.ASCNworkflow

[GetOutofBug]

A object
record: 213
case: 2
|__ (0) 56 noncircular
|__ (2) 157 circular

Excuse me, does this mean that 2 of the 157 looped DNA could be ecDNA? So how do I find these two cases?

[ShixiangWang]

Record (213, including 56 noncircular records plus 157 records) means how many focal amplified genes found in the data, Case means 2 samples were analyzed. Based the analysis, two samples were assigned to circular class as both of them have circular records.

For the result object, check https://shixiangwang.github.io/gcap/reference/fCNA.html