A problem in scoring Ligand-receptor relation

[ChintanBhavsar93]

Hi,

I am using cellcall for cell-cell communication in ovarian tumours. When I execute the code, I encounter the following error -

Warning messages:
1: In serialize(data, node$con) :
'package:stats' may not be available when loading
2: In min(logical(0), na.rm = FALSE) :
no non-missing arguments to min; returning Inf
3: In max(logical(0), na.rm = FALSE) :
no non-missing arguments to max; returning -Inf
4: In min(logical(0), na.rm = FALSE) :
no non-missing arguments to min; returning Inf

Are these warning messages actually the reason for no interaction in my dataset?
Any help would be appreciated!

[RuoyangShao]

Hi, I met the exactly same warnings and get ligand-receptor score matrices filled with 0.
Have you figure out about this issue? Many thanks!

[ChintanBhavsar93]

Hi @RuoyangShao, unfortunately, no. I haven't received or found any solution to this issue. Let me know if you have any luck. By the way, a quick question - are you working with RNA-seq data or protein data?

[RuoyangShao]

Hi @ChintanBhavsar93, I am working with scRNA-seq data and tried using the parameter method = "mean" and successfully got an non-zero output. Although whether this output works downstream is unknown, hope this could benefit your work!