diff --git a/benchmarks/PINNOptimizers/1d_diffusion.jmd b/benchmarks/PINNOptimizers/1d_diffusion.jmd index f8107d3a3..9b67b8bf0 100644 --- a/benchmarks/PINNOptimizers/1d_diffusion.jmd +++ b/benchmarks/PINNOptimizers/1d_diffusion.jmd @@ -13,7 +13,7 @@ science-guided AI techniques. ```julia using NeuralPDE, OptimizationFlux, ModelingToolkit, Optimization, OptimizationOptimJL -using Lux, Plots +using Lux, Plots, OptimizationOptimisers import ModelingToolkit: Interval, infimum, supremum ``` @@ -77,12 +77,12 @@ end ``` ```julia -opt1 = ADAM() -opt2 = ADAM(0.005) -opt3 = ADAM(0.05) -opt4 = RMSProp() -opt5 = RMSProp(0.005) -opt6 = RMSProp(0.05) +opt1 = Optimisers.ADAM() +opt2 = Optimisers.ADAM(0.005) +opt3 = Optimisers.ADAM(0.05) +opt4 = Optimisers.RMSProp() +opt5 = Optimisers.RMSProp(0.005) +opt6 = Optimisers.RMSProp(0.05) opt7 = OptimizationOptimJL.BFGS() opt8 = OptimizationOptimJL.LBFGS() ``` diff --git a/benchmarks/PINNOptimizers/1d_poisson_nernst_planck.jmd b/benchmarks/PINNOptimizers/1d_poisson_nernst_planck.jmd index a2ffd7ec1..c8167f208 100644 --- a/benchmarks/PINNOptimizers/1d_poisson_nernst_planck.jmd +++ b/benchmarks/PINNOptimizers/1d_poisson_nernst_planck.jmd @@ -13,7 +13,7 @@ science-guided AI techniques. ```julia using NeuralPDE, OptimizationFlux, ModelingToolkit, Optimization, OptimizationOptimJL -using Lux, Plots +using Lux, Plots, OptimizationOptimisers import ModelingToolkit: Interval, infimum, supremum ``` @@ -158,12 +158,12 @@ end ``` ```julia -opt1 = ADAM() -opt2 = ADAM(0.005) -opt3 = ADAM(0.05) -opt4 = RMSProp() -opt5 = RMSProp(0.005) -opt6 = RMSProp(0.05) +opt1 = Optimisers.ADAM() +opt2 = Optimisers.ADAM(0.005) +opt3 = Optimisers.ADAM(0.05) +opt4 = Optimisers.RMSProp() +opt5 = Optimisers.RMSProp(0.005) +opt6 = Optimisers.RMSProp(0.05) opt7 = OptimizationOptimJL.BFGS() opt8 = OptimizationOptimJL.LBFGS() ``` diff --git a/benchmarks/PINNOptimizers/Manifest.toml b/benchmarks/PINNOptimizers/Manifest.toml index f79628b7f..41740ce7a 100644 --- a/benchmarks/PINNOptimizers/Manifest.toml +++ b/benchmarks/PINNOptimizers/Manifest.toml @@ -1,42 +1,103 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.8.0-rc1" +julia_version = "1.10.7" manifest_format = "2.0" -project_hash = "61037b1a6b5df42838cd47735ced1e1eac5852e7" +project_hash = "81fd910d3322d05f0435d2a6d781d1c0feb4b896" -[[deps.AbstractAlgebra]] -deps = ["GroupsCore", "InteractiveUtils", "LinearAlgebra", "MacroTools", "Markdown", "Random", "RandomExtensions", "SparseArrays", "Test"] -git-tree-sha1 = "570f72319663abb3009600a42d12f3e0de555a96" -uuid = "c3fe647b-3220-5bb0-a1ea-a7954cac585d" -version = "0.27.1" +[[deps.ADTypes]] +git-tree-sha1 = "72af59f5b8f09faee36b4ec48e014a79210f2f4f" +uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" +version = "1.11.0" +weakdeps = ["ChainRulesCore", "ConstructionBase", "EnzymeCore"] + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesConstructionBaseExt = "ConstructionBase" + ADTypesEnzymeCoreExt = "EnzymeCore" [[deps.AbstractFFTs]] -deps = ["ChainRulesCore", "LinearAlgebra"] -git-tree-sha1 = "69f7020bd72f069c219b5e8c236c1fa90d2cb409" +deps = ["LinearAlgebra"] +git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.2.1" +version = "1.5.0" +weakdeps = ["ChainRulesCore", "Test"] + + [deps.AbstractFFTs.extensions] + AbstractFFTsChainRulesCoreExt = "ChainRulesCore" + AbstractFFTsTestExt = "Test" + +[[deps.AbstractMCMC]] +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "aa469a7830413bd4c855963e3f648bd9d145c2c3" +uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" +version = "5.6.0" [[deps.AbstractTrees]] -git-tree-sha1 = "5c0b629df8a5566a06f5fef5100b53ea56e465a0" +git-tree-sha1 = 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"009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" +version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.41.0+1" +version = "1.52.0+1" + +[[deps.oneTBB_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493" +uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" +version = "2021.12.0+0" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2126,6 +3606,6 @@ version = "3.5.0+0" [[deps.xkbcommon_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "ece2350174195bb31de1a63bea3a41ae1aa593b6" +git-tree-sha1 = "63406453ed9b33a0df95d570816d5366c92b7809" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "0.9.1+5" +version = "1.4.1+2" diff --git a/benchmarks/PINNOptimizers/Project.toml b/benchmarks/PINNOptimizers/Project.toml index f69aeae5b..9cb0c5b04 100644 --- a/benchmarks/PINNOptimizers/Project.toml +++ b/benchmarks/PINNOptimizers/Project.toml @@ -5,15 +5,16 @@ NeuralPDE = "315f7962-48a3-4962-8226-d0f33b1235f0" Optimization = "7f7a1694-90dd-40f0-9382-eb1efda571ba" OptimizationFlux = "253f991c-a7b2-45f8-8852-8b9a9df78a86" OptimizationOptimJL = "36348300-93cb-4f02-beb5-3c3902f8871e" +OptimizationOptimisers = "42dfb2eb-d2b4-4451-abcd-913932933ac1" Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" SciMLBenchmarks = "31c91b34-3c75-11e9-0341-95557aab0344" [compat] -Lux = "0.4, 0.5" -ModelingToolkit = "8" +Lux = "0.4, 0.5, 1" +ModelingToolkit = "9" NeuralPDE = "5" -Optimization = "3" +Optimization = "3, 4" OptimizationFlux = "0.1, 0.2" -OptimizationOptimJL = "0.1, 0.2, 0.3" +OptimizationOptimJL = "0.1, 0.2, 0.3, 0.4" Plots = "1" -SciMLBenchmarks = "0.1" +SciMLBenchmarks = "0.1" \ No newline at end of file diff --git a/benchmarks/PINNOptimizers/allen_cahn.jmd b/benchmarks/PINNOptimizers/allen_cahn.jmd index 860593dca..031105c35 100644 --- a/benchmarks/PINNOptimizers/allen_cahn.jmd +++ b/benchmarks/PINNOptimizers/allen_cahn.jmd @@ -13,7 +13,7 @@ science-guided AI techniques. ```julia using NeuralPDE, OptimizationFlux, ModelingToolkit, Optimization, OptimizationOptimJL -using Lux, Plots +using Lux, Plots, OptimizationOptimisers import ModelingToolkit: Interval, infimum, supremum ``` @@ -117,12 +117,12 @@ end ``` ```julia -opt1 = ADAM() -opt2 = ADAM(0.005) -opt3 = ADAM(0.05) -opt4 = RMSProp() -opt5 = RMSProp(0.005) -opt6 = RMSProp(0.05) +opt1 = Optimisers.ADAM() +opt2 = Optimisers.ADAM(0.005) +opt3 = Optimisers.ADAM(0.05) +opt4 = Optimisers.RMSProp() +opt5 = Optimisers.RMSProp(0.005) +opt6 = Optimisers.RMSProp(0.05) opt7 = OptimizationOptimJL.BFGS() opt8 = OptimizationOptimJL.LBFGS() ``` diff --git a/benchmarks/PINNOptimizers/burgers_equation.jmd b/benchmarks/PINNOptimizers/burgers_equation.jmd index 7415c9687..c651e3995 100644 --- a/benchmarks/PINNOptimizers/burgers_equation.jmd +++ b/benchmarks/PINNOptimizers/burgers_equation.jmd @@ -13,7 +13,7 @@ science-guided AI techniques. ```julia using NeuralPDE, OptimizationFlux, ModelingToolkit, Optimization, OptimizationOptimJL -using Lux, Plots +using Lux, Plots, OptimizationOptimisers import ModelingToolkit: Interval, infimum, supremum ``` @@ -37,7 +37,6 @@ analytic_sol_func(t, x) = -2*nu*(-(-8*t + 2*x)*exp(-(-4*t + x)^2/(4*nu*(t + 1))) ```julia function burgers(strategy, minimizer) - @parameters x t @variables u(..) Dt = Differential(t) @@ -47,16 +46,16 @@ function burgers(strategy, minimizer) eq = Dt(u(x, t)) + u(x, t) * Dx(u(x, t)) ~ nu * Dxx(u(x, t)) bcs = [u(x, 0.0) ~ analytic_sol_func(x, 0.0), - u(0.0, t) ~ u(x_max, t)] + u(0.0, t) ~ u(x_max, t)] domains = [x ∈ Interval(0.0, x_max), - t ∈ Interval(0.0, t_max)] + t ∈ Interval(0.0, t_max)] chain = Lux.Chain(Lux.Dense(2, 16, tanh), Lux.Dense(16, 16, tanh), Lux.Dense(16, 1)) discretization = PhysicsInformedNN(chain, strategy) - indvars = [x, t] #physically independent variables - depvars = [u] #dependent (target) variable + indvars = [x, t] # physically independent variables + depvars = [u] # dependent (target) variable dim = length(domains) @@ -77,28 +76,23 @@ function burgers(strategy, minimizer) end cb = function (p, l) - timeCounter = 0.0 - deltaT_s = time_ns() #Start a clock when the callback begins, this will evaluate questo misurerà anche il calcolo degli uniform error + deltaT_s = time_ns() # Start a clock when the callback begins - ctime = time_ns() - startTime - timeCounter #This variable is the time to use for the time benchmark plot - append!(times, ctime / 10^9) #Conversion nanosec to seconds + ctime = time_ns() - startTime - timeCounter # Time for the time benchmark plot + append!(times, ctime / 10^9) # Conversion nanosec to seconds append!(losses, l) - append!(error, loss_function__(p)) - #println(length(losses), " Current loss is: ", l, " uniform error is, ", loss_function__(p)) + append!(error, l) - timeCounter = timeCounter + time_ns() - deltaT_s #timeCounter sums all delays due to the callback functions of the previous iterations + timeCounter = timeCounter + time_ns() - deltaT_s # Sum all delays due to the callback functions return false end @named pde_system = PDESystem(eq, bcs, domains, indvars, depvars) + prob = discretize(pde_system, discretization) - discretization = NeuralPDE.PhysicsInformedNN(chain, strategy) - prob = NeuralPDE.discretize(pde_system, discretization) - - startTime = time_ns() #Fix initial time (t=0) before starting the training - + startTime = time_ns() # Fix initial time (t=0) before starting the training if minimizer == "both" res = Optimization.solve(prob, ADAM(); callback=cb, maxiters=5) @@ -127,14 +121,14 @@ strategies = [NeuralPDE.QuadratureTraining()] strategies_short_name = ["QuadratureTraining"] -minimizers = [ADAM(), - ADAM(0.000005), - ADAM(0.0005), - RMSProp(), - RMSProp(0.00005), - RMSProp(0.05), - BFGS(), - LBFGS()] +minimizers = [Optimisers.ADAM(), + Optimisers.ADAM(0.000005), + Optimisers.ADAM(0.0005), + Optimisers.RMSProp(), + Optimisers.RMSProp(0.00005), + Optimisers.RMSProp(0.05), + OptimizationOptimJL.BFGS(), + OptimizationOptimJL.LBFGS()] minimizers_short_name = ["ADAM", diff --git a/benchmarks/PINNOptimizers/hamilton_jacobi.jmd b/benchmarks/PINNOptimizers/hamilton_jacobi.jmd index 58f32d717..66b5900ab 100644 --- a/benchmarks/PINNOptimizers/hamilton_jacobi.jmd +++ b/benchmarks/PINNOptimizers/hamilton_jacobi.jmd @@ -13,7 +13,7 @@ science-guided AI techniques. ```julia using NeuralPDE, OptimizationFlux, ModelingToolkit, Optimization, OptimizationOptimJL -using Lux, Plots +using Lux, Plots, OptimizationOptimisers import ModelingToolkit: Interval, infimum, supremum ``` @@ -125,12 +125,12 @@ end ``` ```julia -opt1 = ADAM() -opt2 = ADAM(0.005) -opt3 = ADAM(0.05) -opt4 = RMSProp() -opt5 = RMSProp(0.005) -opt6 = RMSProp(0.05) +opt1 = Optimisers.ADAM() +opt2 = Optimisers.ADAM(0.005) +opt3 = Optimisers.ADAM(0.05) +opt4 = Optimisers.RMSProp() +opt5 = Optimisers.RMSProp(0.005) +opt6 = Optimisers.RMSProp(0.05) opt7 = OptimizationOptimJL.BFGS() opt8 = OptimizationOptimJL.LBFGS() ``` diff --git a/benchmarks/PINNOptimizers/poisson.jmd b/benchmarks/PINNOptimizers/poisson.jmd index bf308b8f8..e03be6284 100644 --- a/benchmarks/PINNOptimizers/poisson.jmd +++ b/benchmarks/PINNOptimizers/poisson.jmd @@ -13,7 +13,7 @@ science-guided AI techniques. ```julia using NeuralPDE, OptimizationFlux, ModelingToolkit, Optimization, OptimizationOptimJL -using Lux, Plots +using Lux, Plots, OptimizationOptimisers import ModelingToolkit: Interval, infimum, supremum ``` @@ -78,12 +78,12 @@ end ``` ```julia -opt1 = ADAM() -opt2 = ADAM(0.005) -opt3 = ADAM(0.05) -opt4 = RMSProp() -opt5 = RMSProp(0.005) -opt6 = RMSProp(0.05) +opt1 = Optimisers.ADAM() +opt2 = Optimisers.ADAM(0.005) +opt3 = Optimisers.ADAM(0.05) +opt4 = Optimisers.RMSProp() +opt5 = Optimisers.RMSProp(0.005) +opt6 = Optimisers.RMSProp(0.05) opt7 = OptimizationOptimJL.BFGS() opt8 = OptimizationOptimJL.LBFGS() ```