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get_evaluation_attributes.cwl
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#!/usr/bin/env cwl-runner
cwlVersion: v1.0
class: CommandLineTool
baseCommand:
- python
- /usr/local/bin/get_evaluation_attributes.py
hints:
- class: DockerRequirement
dockerPull: quay.io/andrewelamb/tumor_deconvolution_challenge_python:1.0
requirements:
- class: InlineJavascriptRequirement
inputs:
- id: evaluationid
type: string
inputBinding:
prefix: -e
- id: synapse_config
type: File
inputBinding:
prefix: -c
outputs:
- id: content_source
type: string
outputBinding:
glob: results.json
loadContents: true
outputEval: $(JSON.parse(self[0].contents)['content_source'])
- id: created_on
type: string
outputBinding:
glob: results.json
loadContents: true
outputEval: $(JSON.parse(self[0].contents)['created_on'])
- id: description
type: string
outputBinding:
glob: results.json
loadContents: true
outputEval: $(JSON.parse(self[0].contents)['description'])
- id: etag
type: string
outputBinding:
glob: results.json
loadContents: true
outputEval: $(JSON.parse(self[0].contents)['etag'])
- id: id
type: string
outputBinding:
glob: results.json
loadContents: true
outputEval: $(JSON.parse(self[0].contents)['id'])
- id: name
type: string
outputBinding:
glob: results.json
loadContents: true
outputEval: $(JSON.parse(self[0].contents)['name'])
- id: ownerid
type: string
outputBinding:
glob: results.json
loadContents: true
outputEval: $(JSON.parse(self[0].contents)['ownerid'])
- id: status
type: string
outputBinding:
glob: results.json
loadContents: true
outputEval: $(JSON.parse(self[0].contents)['status'])
- id: submission_instructions_message
type: string
outputBinding:
glob: results.json
loadContents: true
outputEval: $(JSON.parse(self[0].contents)['submission_instructions_message'])
- id: submission_receipt_message
type: string
outputBinding:
glob: results.json
loadContents: true
outputEval: $(JSON.parse(self[0].contents)['submission_receipt_message'])
$namespaces:
s: https://schema.org/
s:author:
- class: s:Person
s:identifier: https://orcid.org/0000-0002-0326-7494
s:email: [email protected]
s:name: Andrew Lamb