_pkgdown.yml

destination: docs
home:
  title: Relative Risks and Population Attributable Fractions of Diseases Related to Tobacco and Alcohol
url: https://stapm.github.io/tobalcepi/
template:
  params:
    bootswatch: flatly
    ganalytics: UA-167990045-1
authors:
  Duncan Gillespie:
    href: https://www.sheffield.ac.uk/scharr/sections/heds/staff/gillespie_d
  Maddy Henney:
    href: https://www.sheffield.ac.uk/scharr/sections/heds/staff/henney_m
  Colin Angus:
    href: https://www.sheffield.ac.uk/scharr/sections/heds/staff/angus_c
  Alan Brennan:
    href: https://www.sheffield.ac.uk/scharr/sections/heds/staff/brennan_a
    
navbar:
  structure:
    left:  [home, intro, reference, articles]
    right: [github, gitlab, software]
  components:
    home: ~
    intro:
     text: Get started
     href: articles/tobalcepi.html
    reference:
     text: Functions
     href: reference/index.html
    articles:
     text: Technical documentation
     menu:
      - text: Disease risk methods
        href: articles/Methods_for_STAPM_disease_risks.html
      - text: Alcohol disease risks
        href: articles/Alcohol-attributable_diseases_and_dose-response_curves.pdf
      - text: Tobacco disease risks
        href: articles/Smoking_and_the_risks_of_adult_diseases.pdf
      - text: Population Attributable Fraction methods
        href: articles/PAF_methodology_report.html
        
    github:
     icon: fab fa-github fa-lg
     href: https://github.com/STAPM/tobalcepi
    gitlab:
      icon: fab fa-gitlab fa-lg
      href: https://gitlab.com/stapm/r-packages/tobalcepi
    software:
      icon: fa-code
      href: https://stapm.gitlab.io/software.html
    
reference:
- title: "Use of risk functions"
  contents:
  - RRFunc
  - subgroupRisk
  - PAFcalc

- title: "Tobacco relative risks"
- subtitle: "Disease definitions and relative risks"
  contents:
  - RRtob
  - RRTobDR
  - tob_disease_names
  - tob_icd10_lookups
  - tobacco_relative_risks

- subtitle: "Tobacco lag times"
  contents:
  - TobLags
  - tobacco_lag_times
  
- title: "Alcohol relative risks"
- subtitle: "Disease definitions and relative risks"
  contents:
  - RRalc
  - alc_disease_names
  - alc_icd10_lookups

- subtitle: "Disease risk linked to intoxication"
  contents:  
  - AlcBinge
  - AlcBinge_stapm
  - PArisk
  - WArisk_acute
  - binge_params
  - binge_params_stapm
  - binge_params_stapm_scot
- subtitle: "Alcohol lag times"
  contents:
  - AlcLags
  
- title: "Joint tobacco and alcohol risk"
  contents:
  - TobAlcInt
  - tob_alc_risk_int
  - tobalc_icd10_lookups
  
- title: "Misc"
  contents:
  - ExpandCodes
  - disease_groups
  - intervalprob