.gitignore

# === OS / IDE ===
.DS_Store
Thumbs.db
*~
*.swp
*.swo
.vscode/
.idea/
.cursor/

# === Python/runtime caches ===
__pycache__/
**/__pycache__/
*.py[cod]
.cache/
**/.cache/huggingface/
.pytest_cache/
.mypy_cache/
.ruff_cache/

# === Model weights and compressed archives ===
*.pt
*.pth
*.ckpt
*.safetensors
*.onnx
*.gguf
*.ggml
pytorch_model*.bin
model*.bin
*.tar
*.tar.gz
*.tgz
*.tar.zst
*.tzst
*.tar.xz
*.txz
*.tar.bz2
*.tbz2
*.zip
*.zst
*.xz
*.bz2
*.gz
*.rar
*.7z

# === Agent/runtime state ===
.codex/
.mcp.json
**/.claude/scheduled_tasks.lock
**/.claude/scheduled_tasks.json
**/.claude/routines/.state/
**/.claude/worktrees/
**/.claude/checkpoints/
**/.claude/mailbox/
**/.claude/agent-registry.json
**/.claude/agent-memory-local
**/.claude/first-run
**/.claude/assistant-daemon-state.json

# === Private/local archives ===
_private/
.trash/
artifacts/

# === Obsidian local runtime state ===
obsidian-vault/.cache/
obsidian-vault/.trash/
obsidian-vault/Clippings/
obsidian-vault/_attachments/
obsidian-vault/media/
obsidian-vault/Pulp.md
obsidian-vault/*.md

# === Large/generated paper assets ===
obsidian-vault/paperPDFs/
obsidian-vault/assets/
obsidian-vault/batches/
obsidian-vault/manifests/
obsidian-vault/references/
obsidian-vault/paper_list.csv.bak*

# === Generated/local batch aliases ===
/batches

# Keep generated vault data and linked codebases out of Git sync.
# Use the private Hugging Face dataset for obsidian-vault transfer.

## obsidian-vault
obsidian-vault/*
obsidian-vault/.*
!obsidian-vault/.obsidian/
!obsidian-vault/.obsidian/**
obsidian-vault/.obsidian/workspace*.json
obsidian-vault/.obsidian/workspaces.json
obsidian-vault/.obsidian/researchflow_backups/
linkedCodebases/
platform/