Skip to content

Commit 88aaf08

Browse files
committed
Making read depth linked calculation as a circular sequence and refining other functions such as calculating Major and minor alleles based on Genotype Likelihoods
1 parent 4b64025 commit 88aaf08

File tree

5 files changed

+4285
-107
lines changed

5 files changed

+4285
-107
lines changed

cython_constraint.txt

Lines changed: 1 addition & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1 @@
1+
Cython<3

notebook/simGL.ipynb

Lines changed: 4056 additions & 36 deletions
Large diffs are not rendered by default.

simGL/__init__.py

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -1 +1 @@
1-
from .simGL import incorporate_monomorphic, sim_allelereadcounts, allelereadcounts_to_GL, GL_to_Mm, allelereadcounts_to_pileup
1+
from .simGL import incorporate_monomorphic, sim_allelereadcounts, allelereadcounts_to_GL, GL_to_Mm, subset_GL, allelereadcounts_to_pileup

0 commit comments

Comments
 (0)