Add min tests cmd to runtests script (#2400)

* [DLMED] add min tests command

Signed-off-by: Nic Ma <[email protected]>

* [DLMED] update CI script

Signed-off-by: Nic Ma <[email protected]>

Author: Nic-Ma

.github/workflows/pythonapp.yml

@@ -151,7 +151,7 @@ jobs:
       run: |
         python -c 'import torch; print(torch.__version__); print(torch.rand(5,3))'
         python -c "import monai; monai.config.print_config()"
-        python -m tests.min_tests
+        ./runtests.sh --min
       env:
         QUICKTEST: True
 
@@ -196,7 +196,7 @@ jobs:
       run: |
         python -c 'import torch; print(torch.__version__); print(torch.rand(5,3))'
         python -c "import monai; monai.config.print_config()"
-        python -m tests.min_tests
+        ./runtests.sh --min
       env:
         QUICKTEST: True
 

runtests.sh

@@ -33,6 +33,7 @@ fi
 # configuration values
 doCoverage=false
 doQuickTests=false
+doMinTests=false
 doNetTests=false
 doDryRun=false
 doZooTests=false
@@ -54,7 +55,7 @@ PY_EXE=${MONAI_PY_EXE:-$(which python)}
 
 function print_usage {
     echo "runtests.sh [--codeformat] [--autofix] [--black] [--isort] [--flake8] [--clangformat] [--pytype] [--mypy]"
-    echo "            [--unittests] [--disttests] [--coverage] [--quick] [--net] [--dryrun] [-j number] [--clean] [--help] [--version]"
+    echo "            [--unittests] [--disttests] [--coverage] [--quick] [--min] [--net] [--dryrun] [-j number] [--clean] [--help] [--version]"
     echo ""
     echo "MONAI unit testing utilities."
     echo ""
@@ -83,6 +84,7 @@ function print_usage {
     echo "    --disttests       : perform distributed unit testing"
     echo "    --coverage        : report testing code coverage, to be used with \"--net\", \"--unittests\""
     echo "    -q, --quick       : skip long running unit tests and integration tests"
+    echo "    -m, --min         : only run minimal unit tests which do not require optional packages"
     echo "    --net             : perform integration testing"
     echo "    --list_tests      : list unit tests and exit"
     echo ""
@@ -215,6 +217,9 @@ do
         -q|--quick)
             doQuickTests=true
         ;;
+        -m|--min)
+            doMinTests=true
+        ;;
         --net)
             doNetTests=true
         ;;
@@ -507,6 +512,12 @@ then
     export QUICKTEST=True
 fi
 
+if [ $doMinTests = true ]
+then
+    echo "${separator}${blue}min${noColor}"
+    ${cmdPrefix}${PY_EXE} -m tests.min_tests
+fi
+
 # set coverage command
 if [ $doCoverage = true ]
 then