Update check-bioc.yml

Author: mireia-bioinfo

.github/workflows/check-bioc.yml

@@ -38,8 +38,7 @@ env:
   run_covr: 'false'
   run_pkgdown: 'true'
   has_RUnit: 'false'
-  cache-version: 'cache-v1'
-  run_docker: 'false'
+  cache-version: 'cache-v2'
 
 jobs:
   build-check:
@@ -123,32 +122,6 @@ jobs:
           echo $sysreqs
           sudo -s eval "$sysreqs"
 
-      - name: Install macOS system dependencies
-        if: matrix.config.os == 'macOS-latest'
-        run: |
-          ## Enable installing XML from source if needed
-          brew install libxml2
-          echo "XML_CONFIG=/usr/local/opt/libxml2/bin/xml2-config" >> $GITHUB_ENV
-
-          ## Required to install magick as noted at
-          ## https://github.com/r-lib/usethis/commit/f1f1e0d10c1ebc75fd4c18fa7e2de4551fd9978f#diff-9bfee71065492f63457918efcd912cf2
-          brew install imagemagick@6
-
-          ## For textshaping, required by ragg, and required by pkgdown
-          brew install harfbuzz fribidi
-
-          ## For installing usethis's dependency gert
-          brew install libgit2
-
-          ## Required for tcltk
-          brew install xquartz --cask
-
-      - name: Install Windows system dependencies
-        if: runner.os == 'Windows'
-        run: |
-          ## Edit below if you have any Windows system dependencies
-        shell: Rscript {0}
-
       - name: Install BiocManager
         run: |
           message(paste('****', Sys.time(), 'installing BiocManager ****'))
@@ -303,19 +276,3 @@ jobs:
         with:
           name: ${{ runner.os }}-biocversion-devel-r-devel-results
           path: check
-
-        ## Note that DOCKER_PASSWORD is really a token for your dockerhub
-        ## account, not your actual dockerhub account password.
-        ## This comes from
-        ## https://seandavi.github.io/BuildABiocWorkshop/articles/HOWTO_BUILD_WORKSHOP.html#6-add-secrets-to-github-repo
-        ## Check https://github.com/docker/build-push-action/tree/releases/v1
-        ## for more details.
-      - uses: docker/build-push-action@v1
-        if: "!contains(github.event.head_commit.message, '/nodocker') && env.run_docker == 'true' && runner.os == 'Linux' "
-        with:
-          username: ${{ secrets.DOCKER_USERNAME }}
-          password: ${{ secrets.DOCKER_PASSWORD }}
-          repository: pasquali-lab/umi4cats
-          tag_with_ref: true
-          tag_with_sha: true
-          tags: latest