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-t should apply to all readds #4

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adadiehl opened this issue Dec 10, 2020 · 0 comments
Open

-t should apply to all readds #4

adadiehl opened this issue Dec 10, 2020 · 0 comments

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@adadiehl
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Once corrected to catch the -t option, current implementation applies trimming only to a subset of reads that match existing cases in trim_pair. Others fall through untrimmed. Also, trim_pair contains redundant "if (alignment_start > 0)" test at line 230.
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@adadiehl